View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_low_7 (Length: 435)

Name: NF2281_low_7
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_low_7
NF2281_low_7
[»] chr2 (4 HSPs)
chr2 (19-366)||(1190654-1190981)
chr2 (124-192)||(1303198-1303266)
chr2 (23-102)||(1194479-1194555)
chr2 (344-385)||(34106512-34106553)
[»] chr7 (5 HSPs)
chr7 (219-294)||(1326055-1326130)
chr7 (219-295)||(12629822-12629898)
chr7 (219-295)||(24504166-24504242)
chr7 (239-295)||(36653261-36653317)
chr7 (233-279)||(35595322-35595368)
[»] chr4 (3 HSPs)
chr4 (336-388)||(38653855-38653909)
chr4 (370-400)||(35313253-35313283)
chr4 (241-295)||(42040442-42040496)
[»] chr3 (3 HSPs)
chr3 (219-294)||(19199999-19200074)
chr3 (241-295)||(6778670-6778724)
chr3 (219-279)||(53038822-53038882)
[»] chr5 (2 HSPs)
chr5 (343-389)||(16110081-16110126)
chr5 (336-385)||(40266557-40266605)
[»] scaffold0015 (1 HSPs)
scaffold0015 (231-279)||(33613-33661)
[»] chr8 (1 HSPs)
chr8 (241-293)||(43532014-43532066)
[»] chr6 (1 HSPs)
chr6 (222-278)||(31778765-31778821)
[»] chr1 (1 HSPs)
chr1 (226-294)||(43781926-43781994)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 1190654 - 1190981
Alignment:
Q  19 atataagagtgttaatcaaaatattttatatttaataatgcatgctaccgagtgttcataccaaaagcaccaacttgcgagtgcatgtgtgggatggttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                  ||||||||||||||||||||    
T  1190654 atataagagtgttaatcaaaatattttatatttaataatgcatactaccgagtgttcatacc------------------gtgcatgtgtgggatggttg 1190735  T
Q  119 ggggtacaatttggcaaaccaatcgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaacaaagaatcctgctcttctcccatta 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1190736 ggggtacaatttggcaaaccaattgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaacaaagaatcctgctcttctcccatta 1190835  T
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaacgcacacacagcgtgacttaagtc 318  Q
    |||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| ||    
T  1190836 ctcccacccaaccaaactgatcaaaatatccctacattagttaactaacgcatgtgtaaaattctgtgttagttaacg--cacacagcgtgacttaaatc 1190933  T
Q  319 atataaatataaaatattgcgtaagttaactcacactaatgttaatct 366  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  1190934 atacaaatataaaacattgcgtaagttaactcacactaatgttaatct 1190981  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 1303198 - 1303266
Alignment:
Q  124 acaatttggcaaaccaatcgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaa 192  Q
    ||||| ||||||||||||| | || |||||||||||||| || ||||||| |||| |||||||||||||    
T  1303198 acaatctggcaaaccaatccagaacaccaacttcaaactgccgggagtggacaccgtaattgctttcaa 1303266  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 1194555 - 1194479
Alignment:
Q  23 aagagtgttaatcaaaatattttatatttaataatgcatgctaccgagtgttcataccaaaagcaccaacttgcgagtgc 102  Q
    |||||||||||||||||||| | |||||||||||||||    || |||||||||| | ||||||||||||| ||| ||||    
T  1194555 aagagtgttaatcaaaatatatcatatttaataatgca---cacagagtgttcatgcgaaaagcaccaactcgcgcgtgc 1194479  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 34106553 - 34106512
Alignment:
Q  344 ttaactcacactaatgttaatctttgcgtgagttaactcacg 385  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  34106553 ttaactcacactagtcttaatctttgcgtgagttaactcacg 34106512  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 1326055 - 1326130
Alignment:
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaa 294  Q
    ||||||||||||||||| ||| ||||||| ||| | |||||||||||||||| ||||||| |||||||||||||||    
T  1326055 ctcccatccaatcaaaccgatcaaaatacacctgcgttagttaactaacacaggtgtaaatttctgtgttagttaa 1326130  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 12629898 - 12629822
Alignment:
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 295  Q
    |||||| |||||||| ||||  |||||||| || | ||||||||||||||||||||||||||| || ||||||||||    
T  12629898 ctcccacccaatcaagctgaccaaaatacctctgcgttagttaactaacacatgtgtaaaattttgcgttagttaac 12629822  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 24504242 - 24504166
Alignment:
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 295  Q
    |||||| |||| |||| |||| ||||||||| | | | ||||||| ||| ||||||||||||||||||||| |||||    
T  24504242 ctcccacccaaccaaattgatcaaaatacccatgcgtgagttaacaaacgcatgtgtaaaattctgtgttaattaac 24504166  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 36653261 - 36653317
Alignment:
Q  239 tgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 295  Q
    ||||||||| ||| | ||||||||||||| || |||||||||| |||||||||||||    
T  36653261 tgaaaatacgcctgcgttagttaactaacgcaagtgtaaaattgtgtgttagttaac 36653317  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 35595368 - 35595322
Alignment:
Q  233 aactgatgaaaatacccctacattagttaactaacacatgtgtaaaa 279  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  35595368 aactgatcaaaatacccctgcattagttaactaacgcaagtgtaaaa 35595322  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 38653909 - 38653855
Alignment:
Q  336 tgcgtaagttaactcacactaatgttaatctttgc--gtgagttaactcacgttg 388  Q
    ||||| |||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  38653909 tgcgtgagttaagtcacactagtgttaatctttgcgtgtgagttaactcacgttg 38653855  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 400
Target Start/End: Original strand, 35313253 - 35313283
Alignment:
Q  370 cgtgagttaactcacgttggttttaaacaat 400  Q
    |||||||||||||||||||||||||||||||    
T  35313253 cgtgagttaactcacgttggttttaaacaat 35313283  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 42040442 - 42040496
Alignment:
Q  241 aaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 295  Q
    ||||||||||| | ||||||||||||| || |||||||| | |||||||||||||    
T  42040442 aaaatacccctgcgttagttaactaacgcacgtgtaaaactatgtgttagttaac 42040496  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 19200074 - 19199999
Alignment:
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaa 294  Q
    |||||| |||| ||||||||| |||||||||||   ||||||||| ||| |||||||||| || || |||||||||    
T  19200074 ctcccacccaaccaaactgatcaaaatacccctgtgttagttaacaaacgcatgtgtaaatttatgcgttagttaa 19199999  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 6778724 - 6778670
Alignment:
Q  241 aaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 295  Q
    ||||||||| ||| |||||||||||||||| ||||||| |  |||||||||||||    
T  6778724 aaaatacccatacgttagttaactaacacaagtgtaaattaatgtgttagttaac 6778670  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 53038822 - 53038882
Alignment:
Q  219 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaa 279  Q
    |||||| |||| ||||||||  |||||||||||   ||||||||||||| |||||||||||    
T  53038822 ctcccacccaaccaaactgaccaaaatacccctgtgttagttaactaacgcatgtgtaaaa 53038882  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 16110126 - 16110081
Alignment:
Q  343 gttaactcacactaatgttaatctttgcgtgagttaactcacgttgg 389  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||    
T  16110126 gttaactcacactaatgttaat-tctgcatgagttaactcacgttgg 16110081  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 40266605 - 40266557
Alignment:
Q  336 tgcgtaagttaactcacactaatgttaatctttgcgtgagttaactcacg 385  Q
    ||||| ||||||||||| ||||||||||  ||||||||||||||||||||    
T  40266605 tgcgtgagttaactcacgctaatgttaaa-tttgcgtgagttaactcacg 40266557  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 33661 - 33613
Alignment:
Q  231 caaactgatgaaaatacccctacattagttaactaacacatgtgtaaaa 279  Q
    ||||||||  ||||||||||||| ||||||||||||| || ||||||||    
T  33661 caaactgaccaaaatacccctacgttagttaactaacgcaagtgtaaaa 33613  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 43532014 - 43532066
Alignment:
Q  241 aaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagtta 293  Q
    ||||||||||| | ||||||||||||| || ||||||| || |||||||||||    
T  43532014 aaaatacccctgcgttagttaactaacgcaggtgtaaatttatgtgttagtta 43532066  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 31778765 - 31778821
Alignment:
Q  222 ccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaa 278  Q
    |||||||| ||||||||  ||||||||||| |  |||||||||||| ||||||||||    
T  31778765 ccatccaaccaaactgaccaaaatacccctgcgctagttaactaacgcatgtgtaaa 31778821  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 43781926 - 43781994
Alignment:
Q  226 ccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaa 294  Q
    |||| ||||||||  ||||||| | | | ||||||||| ||| ||||||||||||| ||||||||||||    
T  43781926 ccaaccaaactgaccaaaatactcatgcgttagttaacaaacgcatgtgtaaaattatgtgttagttaa 43781994  T

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