View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_8 (Length: 427)
Name: NF2281_low_8
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 205 - 418
Target Start/End: Complemental strand, 52293861 - 52293649
Alignment:
| Q |
205 |
tgaactctgcctttctagtagatatgttaaattctggctgttacttttatattaagcctcaattcatttcatttagggtatgttttggatggccagaatg |
304 |
Q |
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| T |
52293861 |
tgaactcttcctttctagtagatatgttaaattctggctgttacttttatattaagcctcaattcatttcatttagggtatgttt-ggattgccagaatg |
52293763 |
T |
|
| Q |
305 |
ttgcatagctaaatgaattcgggaattctttataacatttaaataaggcttaattcatttttagaaacatttcatagcttccttaattcaaatattctgt |
404 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52293762 |
ttgcatagctaaatgaattcgggaattctgtataacatttaaataaggcttaattcatttttagaaacattccatagcttccttaattcaaatattctgt |
52293663 |
T |
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| Q |
405 |
ctacctcttcatct |
418 |
Q |
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|||||||||||||| |
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| T |
52293662 |
ctacctcttcatct |
52293649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 52293976 - 52293859
Alignment:
| Q |
19 |
acatgtcatagtttgtttcacaacttgatagtgataacacacatctatgtccttgaggtataactggattctttgaaagcttgattagggagctaccatc |
118 |
Q |
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| T |
52293976 |
acatgtcatagtttgtttcacaacttgatagtgataacacacatctatgtccttgaggtataactggattctttgaaagcttgattagggagctaccatc |
52293877 |
T |
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| Q |
119 |
tcgttgaataatagttga |
136 |
Q |
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| T |
52293876 |
tcgttgaataatagttga |
52293859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 38272742 - 38272705
Alignment:
| Q |
355 |
taattcatttttagaaacatttcatagcttccttaatt |
392 |
Q |
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| T |
38272742 |
taattcatttttagaaacattttatagcttccttaatt |
38272705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 2384389 - 2384428
Alignment:
| Q |
353 |
cttaattcatttttagaaacatttcatagcttccttaatt |
392 |
Q |
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| T |
2384389 |
cttaattcatttttagaaacattttataacttccttaatt |
2384428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 51504582 - 51504546
Alignment:
| Q |
356 |
aattcatttttagaaacatttcatagcttccttaatt |
392 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
51504582 |
aatttatttttagaaacattttatagcttccttaatt |
51504546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 48663104 - 48663048
Alignment:
| Q |
336 |
ataacatttaaataaggcttaattcatttttagaaacatttcatagcttccttaatt |
392 |
Q |
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||||||||| ||| | ||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
48663104 |
ataacatttcaattatacttaatttattttgagaaacattttatagcttccttaatt |
48663048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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