View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_high_1 (Length: 520)
Name: NF2282_high_1
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 169 - 505
Target Start/End: Complemental strand, 4516929 - 4516593
Alignment:
| Q |
169 |
ccatctccattgcattaacattggaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggtaa |
268 |
Q |
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| T |
4516929 |
ccatctccattgcattaacatttgaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggcaa |
4516830 |
T |
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| Q |
269 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcattagtggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
368 |
Q |
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| T |
4516829 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcatcattggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
4516730 |
T |
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| Q |
369 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgctattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
468 |
Q |
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| T |
4516729 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgttattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
4516630 |
T |
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| Q |
469 |
tattttcctcttcttgagtactatttatcaagtaatt |
505 |
Q |
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| T |
4516629 |
tattttcctcttcttgagtactattcatcaagtaatt |
4516593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 4517076 - 4516991
Alignment:
| Q |
19 |
atgaattttctctgctgttttgtagaaatttggccaaactgaaggatggattgttgagagaattagtcattggattctgagaagaa |
104 |
Q |
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| T |
4517076 |
atgaattttctctgctgttttgtagaaatttggccaaactgaaggatggattgttgagagaattagtcattggattctgagaagaa |
4516991 |
T |
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