View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_high_13 (Length: 240)
Name: NF2282_high_13
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6751694 - 6751474
Alignment:
| Q |
1 |
cggagttattagtagcaagactttttaaagcacggtattactaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagag |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6751694 |
cggagttattaatagcaagactttttaaagcacgatattaccaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagag |
6751595 |
T |
|
| Q |
101 |
tattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacggagataaaattcgattttttcaagattggtggctcatgaatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
6751594 |
tattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaagaaagataaaattcgagtttttcaagataggtggctcatgaatggc |
6751495 |
T |
|
| Q |
201 |
agtttagtacagcctgctgcg |
221 |
Q |
| |
|
|||||| ||||||||||||| |
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|
| T |
6751494 |
ggtttagcacagcctgctgcg |
6751474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6466832 - 6467051
Alignment:
| Q |
1 |
cggagttattagtagcaagactttttaaagcacggtattactaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6466832 |
cggagttactagtagcaagactttttaaagcacggtattaccgaaggaatgatatttttgaggcaa-gaaaggaaataattcaagttatgtgtggaagag |
6466930 |
T |
|
| Q |
101 |
tattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacggagataaaattcgattttttcaagattggtggctcatgaatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
6466931 |
tattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaagggagataaaatttgagtttttcaagataggtggctcatgaatggc |
6467030 |
T |
|
| Q |
201 |
agtttagtacagcctgctgcg |
221 |
Q |
| |
|
|||||| | ||||||||||| |
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|
| T |
6467031 |
ggtttagcagagcctgctgcg |
6467051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 6956415 - 6956197
Alignment:
| Q |
3 |
gagttattagtagcaagactttttaaagcacggtattactaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagagta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6956415 |
gagttattagtagcaagactttttaaagcacgacattaccgaaggaatgatatttttgaggcaaagaaaggaaacaattcaagttatgtgtggaagagta |
6956316 |
T |
|
| Q |
103 |
ttcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacggagataaaattcgattttttcaagattggtggctcatgaatggcag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
6956315 |
ttcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacagagataaaattcgggtttttcaagataggtggctcatgaatggcag |
6956216 |
T |
|
| Q |
203 |
tttagtacagcctgctgcg |
221 |
Q |
| |
|
||||| ||||||| ||||| |
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|
| T |
6956215 |
tttagcacagcctactgcg |
6956197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22009850 - 22009628
Alignment:
| Q |
1 |
cggagttattagtagcaagactttttaaa-gcacggtattactaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaaga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||| |||| ||||||||||||||||| |
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|
| T |
22009850 |
cggagttattagtagcaagactttttaaaagcacggtattatcgaaggaatgctatttttgaggcaaataaaggaaacaatttaagttatgtgtggaaga |
22009751 |
T |
|
| Q |
100 |
gtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacggagataaaattcgattttttcaagattggtggctcatgaatgg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||| || |
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|
| T |
22009750 |
gtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagatcggtaacggagataaaattcgggtttttcaagataggtggctcgtgaacgg |
22009651 |
T |
|
| Q |
200 |
cagtttagtacagcctgctgcgt |
222 |
Q |
| |
|
| |||||| |||||||||||||| |
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|
| T |
22009650 |
cggtttagcacagcctgctgcgt |
22009628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21272700 - 21272484
Alignment:
| Q |
1 |
cggagttattagtagcaagactttttaaagcacggtattactaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||| |||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
21272700 |
cggagttattagtagcgagactttttaaagcctggtattatccgaggaattatatttttgaagcaaagaaaggacacaattccagttatgtgtggaagag |
21272601 |
T |
|
| Q |
101 |
tattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacggagataaaattc-gattttttcaagattggtggctcatgaatgg |
199 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||| | | ||||||||||| |||||||| | || | |
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|
| T |
21272600 |
tattcacgaggctatacccatggttaagcaaggaacacagtggacgattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacag |
21272501 |
T |
|
| Q |
200 |
cagtttagtacagcctg |
216 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
21272500 |
cagtttagcacagcctg |
21272484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 11262700 - 11262758
Alignment:
| Q |
91 |
tgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagatt |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| | | ||||| ||| |||||||||| |
|
|
| T |
11262700 |
tgtggaagagtatttatgaggctatacctatggtaaggtaaggagcaatgtggaagatt |
11262758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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