View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2282_high_14 (Length: 238)

Name: NF2282_high_14
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2282_high_14
NF2282_high_14
[»] chr4 (22 HSPs)
chr4 (136-222)||(39085901-39085987)
chr4 (1-90)||(39085728-39085816)
chr4 (138-200)||(21957094-21957156)
chr4 (138-210)||(12075904-12075976)
chr4 (142-201)||(35304798-35304857)
chr4 (138-198)||(8844072-8844132)
chr4 (138-198)||(8857036-8857096)
chr4 (138-209)||(33915912-33915983)
chr4 (138-204)||(33516352-33516418)
chr4 (9-47)||(39081855-39081893)
chr4 (140-190)||(40420865-40420915)
chr4 (169-226)||(12505778-12505835)
chr4 (138-226)||(9929425-9929513)
chr4 (138-190)||(36306536-36306587)
chr4 (147-226)||(17113259-17113338)
chr4 (141-200)||(37926314-37926373)
chr4 (138-195)||(25299120-25299177)
chr4 (138-202)||(25940897-25940961)
chr4 (165-201)||(30034476-30034512)
chr4 (138-226)||(7334440-7334530)
chr4 (138-197)||(25265432-25265491)
chr4 (138-190)||(43228673-43228724)
[»] chr5 (12 HSPs)
chr5 (139-224)||(35583862-35583947)
chr5 (136-226)||(16311531-16311621)
chr5 (138-225)||(8020363-8020450)
chr5 (138-225)||(29664716-29664802)
chr5 (138-190)||(7350700-7350752)
chr5 (138-224)||(18452142-18452228)
chr5 (140-224)||(17152915-17152999)
chr5 (147-226)||(27900655-27900735)
chr5 (167-226)||(12457291-12457350)
chr5 (147-210)||(12709230-12709293)
chr5 (140-210)||(12770473-12770543)
chr5 (138-188)||(40187951-40188001)
[»] chr2 (9 HSPs)
chr2 (138-219)||(34544575-34544656)
chr2 (146-226)||(29656992-29657072)
chr2 (138-225)||(31601023-31601111)
chr2 (139-218)||(11958800-11958879)
chr2 (142-225)||(34214913-34214996)
chr2 (168-218)||(13531694-13531744)
chr2 (138-226)||(4961658-4961745)
chr2 (138-224)||(13954492-13954578)
chr2 (138-224)||(14095699-14095785)
[»] chr1 (12 HSPs)
chr1 (138-226)||(14890908-14890995)
chr1 (138-226)||(42729200-42729288)
chr1 (138-225)||(25155084-25155171)
chr1 (138-226)||(14902886-14902973)
chr1 (138-213)||(48538170-48538245)
chr1 (138-199)||(8880195-8880256)
chr1 (138-195)||(25180949-25181005)
chr1 (169-210)||(45460316-45460357)
chr1 (138-202)||(39219005-39219069)
chr1 (138-219)||(48125928-48126008)
chr1 (138-188)||(11198205-11198255)
chr1 (168-213)||(5293679-5293724)
[»] scaffold1322 (1 HSPs)
scaffold1322 (138-210)||(856-928)
[»] chr8 (10 HSPs)
chr8 (138-209)||(8545622-8545694)
chr8 (138-185)||(29918351-29918398)
chr8 (136-219)||(35747458-35747540)
chr8 (166-200)||(12468497-12468531)
chr8 (146-227)||(14687246-14687327)
chr8 (169-202)||(39379858-39379891)
chr8 (138-190)||(9476296-9476348)
chr8 (141-200)||(6388787-6388846)
chr8 (168-203)||(18151278-18151313)
chr8 (145-201)||(5793342-5793397)
[»] chr7 (11 HSPs)
chr7 (165-225)||(11472968-11473028)
chr7 (145-219)||(35305675-35305749)
chr7 (138-202)||(37217753-37217817)
chr7 (138-225)||(31345275-31345362)
chr7 (138-226)||(4101291-4101378)
chr7 (168-219)||(30999766-30999817)
chr7 (171-225)||(19440268-19440322)
chr7 (146-200)||(29292447-29292501)
chr7 (145-202)||(5432255-5432312)
chr7 (161-194)||(35074304-35074337)
chr7 (138-202)||(3156837-3156901)
[»] chr6 (16 HSPs)
chr6 (138-202)||(9402349-9402413)
chr6 (139-202)||(24221361-24221424)
chr6 (141-210)||(32959672-32959741)
chr6 (138-227)||(8321050-8321139)
chr6 (138-219)||(14321616-14321697)
chr6 (138-202)||(1948071-1948135)
chr6 (168-201)||(29340694-29340727)
chr6 (168-201)||(29342192-29342225)
chr6 (138-219)||(32054538-32054621)
chr6 (171-226)||(256748-256803)
chr6 (138-188)||(20348811-20348861)
chr6 (168-220)||(373043-373095)
chr6 (138-202)||(2126902-2126966)
chr6 (169-201)||(29340588-29340620)
chr6 (169-201)||(29342298-29342330)
chr6 (163-219)||(30236597-30236653)
[»] chr3 (5 HSPs)
chr3 (138-202)||(30905049-30905113)
chr3 (138-207)||(26207031-26207100)
chr3 (171-220)||(34592933-34592982)
chr3 (138-219)||(40890111-40890191)
chr3 (138-202)||(27252314-27252377)
[»] scaffold0244 (1 HSPs)
scaffold0244 (138-213)||(4849-4924)
[»] scaffold0264 (1 HSPs)
scaffold0264 (139-213)||(17740-17814)
[»] scaffold0157 (1 HSPs)
scaffold0157 (169-226)||(14642-14699)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 39085901 - 39085987
Alignment:
Q  136 attaaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagt 222  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39085901 attaaaaataaaagtatttttcagtcccaattgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagt 39085987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39085728 - 39085816
Alignment:
Q  1 ttttcatttattcaatagatttcttggatatagattcctaataagtatgcaaggcaatggggcggaagcgaaaacgagatttatcttttc 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  39085728 ttttcatttattcaatagatttcttggatatagattcctaataagtatgcaagg-aatggggcggaggcgaaaacgagttttatcttttc 39085816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 21957156 - 21957094
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagat 200  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||    
T  21957156 taaaaataaaagtatttttcagcctcatgtgcaatgttgtaatgcattatccaacaaagagat 21957094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 12075976 - 12075904
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    |||||||||||||||||||||  | | || ||| ||||||||||||||||||||||||||||||| |||||||    
T  12075976 taaaaataaaagtatttttcaacctcgagcgcattgttgtaatgcattatccaacaaagagatgatgacgatc 12075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 35304857 - 35304798
Alignment:
Q  142 aataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatg 201  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||    
T  35304857 aataaaagtattttttagccccaagtgcaatgttgtaatgcattatccagtaaagagatg 35304798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 8844132 - 8844072
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagag 198  Q
    |||| ||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||    
T  8844132 taaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaagag 8844072  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 8857096 - 8857036
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagag 198  Q
    |||| ||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||    
T  8857096 taaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaagag 8857036  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 33915912 - 33915983
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgat 209  Q
    |||||| | ||||||||||||| ||  ||  |||||||||||||||||| ||||||||||||||||||||||    
T  33915912 taaaaaaagaagtatttttcagcccagagctcaatgttgtaatgcattacccaacaaagagatgacgacgat 33915983  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 33516418 - 33516352
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacg 204  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||||||  |  ||||||||||||    
T  33516418 taaaaataaaagtttttttcagtcccgattgcaatgttgtaatgcattatatagtaaagagatgacg 33516352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 39081855 - 39081893
Alignment:
Q  9 tattcaatagatttcttggatatagattcctaataagta 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39081855 tattcaatagatttcttggatatagattcctaataagta 39081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 40420915 - 40420865
Alignment:
Q  140 aaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatcca 190  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  40420915 aaaatgaaagtatttttcagccccaagcgcaatgttgtaatgcattatcca 40420865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12505835 - 12505778
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||| ||||||    
T  12505835 caatgttgtaatgcattatccagcaaagagatgaagacgatcgatgtctatggtgatg 12505778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 9929513 - 9929425
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||| |||||||| |||| | || | || ||||| |||||||||| |  ||||||||||||||||||||| | ||||||||||    
T  9929513 taaaaataaatgtattttttagtctcgagcggaacgttgtgatgcattatctaggaaagagatgacgacgatcgatgattatagtgatg 9929425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 36306536 - 36306587
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatcca 190  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  36306536 taaaaataaaagcatttttca-tcccaagcgcaatgttgtaatgcattatcca 36306587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 17113338 - 17113259
Alignment:
Q  147 aagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||| || ||| ||  ||||||||||||||||||| |||||||||||| | ||||||| || ||| ||||||||    
T  17113338 aagtattttttagccccgagcacaatgttgtaatgcattattcaacaaagagattatgacgatcaatgactgtagtgatg 17113259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 37926314 - 37926373
Alignment:
Q  141 aaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagat 200  Q
    |||||||||||||||| |||||  || ||||||||||||||||||||| | |||||||||    
T  37926314 aaataaaagtattttttagtcctgagcgcaatgttgtaatgcattatctagcaaagagat 37926373  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 25299177 - 25299120
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaa 195  Q
    |||||||||||||||||||||| |   |||||||| ||||||||||||||||| ||||    
T  25299177 taaaaataaaagtatttttcagccttgagtgcaattttgtaatgcattatccagcaaa 25299120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 25940897 - 25940961
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||| ||||||||||| || ||  || |||||||||||||||||||||||| ||| ||||||    
T  25940897 taaaaatcaaagtattttttagccctgagcgcaatgttgtaatgcattatccaaaaaatagatga 25940961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 30034476 - 30034512
Alignment:
Q  165 agtgcaatgttgtaatgcattatccaacaaagagatg 201  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30034476 agtgcaatgttgtaatgcattatccaacgaagagatg 30034512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 7334530 - 7334440
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatg--ttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||| | ||| |   |||||  ||||||||||||||||||||||||||  | ||||||||||  |||| ||||||    
T  7334530 taaaaataaaagtatttttctgccccgaacacaatgcgttgtaatgcattatccaacaaagagacaatgacgatcgatggctatggtgatg 7334440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 25265491 - 25265432
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaaga 197  Q
    ||||||||||||||||||| ||   | || ||||||||||||||||||||||| ||||||    
T  25265491 taaaaataaaagtattttttagcttcgagcgcaatgttgtaatgcattatccagcaaaga 25265432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 43228724 - 43228673
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatcca 190  Q
    |||||||| |||| |||||||||| | || |||||||||||||||||||||||    
T  43228724 taaaaatagaagt-tttttcagtctcgagggcaatgttgtaatgcattatcca 43228673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 35583862 - 35583947
Alignment:
Q  139 aaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtga 224  Q
    ||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  35583862 aaaaataaaagtatttttcagccacgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgatgactatggtga 35583947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 16311621 - 16311531
Alignment:
Q  136 attaaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||| |||  |||||||||| ||| || |||||||||||||| |||||| ||||||||||||| ||||||||||  |||| ||||||    
T  16311621 attaaaaacaaacatatttttcagccccgagcgcaatgttgtaatgaattatcaaacaaagagatgatgacgatcgatggctatggtgatg 16311531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 8020363 - 8020450
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    |||||||||| |||||||| || | | ||| ||||| |||||||||||||||||||||||||| | || ||||||| ||||| |||||    
T  8020363 taaaaataaatgtattttttagccacgagtacaatgctgtaatgcattatccaacaaagagataatgatgatcgatgactatggtgat 8020450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 29664716 - 29664802
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    ||||||||||||||||||| |  ||| || ||||||||||||||||||||||| |||  |||||| |||||||||| ||||| |||||    
T  29664716 taaaaataaaagtattttttac-cccgagcgcaatgttgtaatgcattatccagcaacaagatgatgacgatcgatgactatggtgat 29664802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 7350752 - 7350700
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatcca 190  Q
    ||||||||||||||||||||||  || || |||||||||||||||||||||||    
T  7350752 taaaaataaaagtatttttcagctccgagcgcaatgttgtaatgcattatcca 7350700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 18452228 - 18452142
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtga 224  Q
    |||||||||||||| |||| || ||| |  ||||||||||||||||||||||| |||| |||||  | |||| ||| ||||||||||    
T  18452228 taaaaataaaagtaatttttagccccgaacgcaatgttgtaatgcattatccagcaaaaagatgttggcgattgatgactatagtga 18452142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 17152915 - 17152999
Alignment:
Q  140 aaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtga 224  Q
    ||||||||||  |||||||  ||||||||| | ||||||||||||||||||  |||| ||||| |||||| |||  |||||||||    
T  17152915 aaaataaaagattttttcaaccccaagtgcgaagttgtaatgcattatccagtaaagtgatgatgacgattgatggctatagtga 17152999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 27900735 - 27900655
Alignment:
Q  147 aagtatttttcagtcccaagtgcaatg-ttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    ||||||||||||| ||| || |||||| |||||||| || |||||| |||||||| | |||||||||| ||||| ||||||    
T  27900735 aagtatttttcagccccgagcgcaatgtttgtaatgaatcatccaagaaagagattatgacgatcgatgactatggtgatg 27900655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 12457291 - 12457350
Alignment:
Q  167 tgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||| |||||||||||||||||| |||||| |  ||||||| ||||| ||||||    
T  12457291 tgcaatgttgcaatgcattatccaacaaatagatgatggtgatcgatgactatggtgatg 12457350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 12709230 - 12709293
Alignment:
Q  147 aagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    ||||||||||||| | |||   |||||||||| ||||||||||| ||||||||||| |||||||    
T  12709230 aagtatttttcagccacaaactcaatgttgtattgcattatccagcaaagagatgatgacgatc 12709293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 12770473 - 12770543
Alignment:
Q  140 aaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    |||| |||| |||||||||| | |||   |||||||||| ||||||||||| ||||||||||| |||||||    
T  12770473 aaaaaaaaattatttttcagccacaaactcaatgttgtattgcattatccagcaaagagatgatgacgatc 12770543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 40188001 - 40187951
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatc 188  Q
    ||||||||||||||||||| || ||| |||| | |||||||||||||||||    
T  40188001 taaaaataaaagtattttttagccccgagtgaagtgttgtaatgcattatc 40187951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 34544656 - 34544575
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  34544656 taaaaataaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcaatgactat 34544575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 29657072 - 29656992
Alignment:
Q  146 aaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||| ||| || |||||||||||||||||||||||  |||||||||| |||||||||| |||||| |||||    
T  29657072 aaagtatttttcagccccgagcgcaatgttgtaatgcattatccaggaaagagatgatgacgatcgatgactataatgatg 29656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 31601111 - 31601023
Alignment:
Q  138 taaaaataaaagtatttttc-agtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    |||||||||||||||||||  ||  || |||| ||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||    
T  31601111 taaaaataaaagtatttttttagctccgagtgtaatgttgtaatgcattatccaacaaagagatgatgacgatcaatgactatggtgat 31601023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 11958800 - 11958879
Alignment:
Q  139 aaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataacta 218  Q
    |||||||||||||||||||| |  | | ||||||||||||||||||||| |||||||||| || ||| ||||||| ||||    
T  11958800 aaaaataaaagtatttttcaatttcgaatgcaatgttgtaatgcattattcaacaaagaggtggcgatgatcgatgacta 11958879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 34214996 - 34214913
Alignment:
Q  142 aataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    ||||||||||||||||||||   |  ||||||||||||||||||||||| ||||||||||| || |||| || ||||| |||||    
T  34214996 aataaaagtatttttcagtcttgaacgcaatgttgtaatgcattatccagcaaagagatgatgatgatctatgactatggtgat 34214913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 13531694 - 13531744
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataacta 218  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  13531694 gcaatgttgtaatacattatcctacaaagagatgatgacgatcgataacta 13531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 4961745 - 4961658
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||||| || ||| ||||||||||||  |  |||||| ||||||||||| ||| |||||| ||||| ||||||    
T  4961745 taaaaataaaagtatttttcagcccaaagcgcaatgttgtaacac-ctatccagcaaagagatgatgacaatcgatgactatggtgatg 4961658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 13954492 - 13954578
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtga 224  Q
    |||||||||||||  ||| ||| ||| || |||| |||||||||||||||||| ||| ||||||| ||| | |||| ||||| ||||    
T  13954492 taaaaataaaagttctttgcagccccgagcgcaaagttgtaatgcattatccagcaatgagatgatgacaaacgatgactatggtga 13954578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 14095699 - 14095785
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtga 224  Q
    |||||||||||||  ||| ||| ||| || |||| |||||||||||||||||| ||| ||||||| ||| | |||| ||||| ||||    
T  14095699 taaaaataaaagttctttgcagccccgagcgcaaagttgtaatgcattatccagcaatgagatgatgacaaacgatgactatggtga 14095785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 14890908 - 14890995
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || | ||||||||| |||| ||||||    
T  14890908 taaaaataaaagtatttttcagtccga-gtgcaatgttgtaatgcattatccagcaaagagacgatgccgatcgatagctatggtgatg 14890995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 42729288 - 42729200
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||  |||||||||| | ||||||||  |||| ||||||    
T  42729288 taaaaataaaagtatttttcagtcctgaatgcaatgttgtaatgcattatccattaaagagatgatgtcgatcgatgtctatggtgatg 42729200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 25155171 - 25155084
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    ||||||||||||||||||| |||||| ||  ||||| |||||||||||| ||||||||||||||| || ||||||| ||||| |||||    
T  25155171 taaaaataaaagtattttttagtcccgagcacaatgctgtaatgcattacccaacaaagagatgatgatgatcgatgactatggtgat 25155084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 14902886 - 14902973
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||| || | || |||||| |||| ||||||    
T  14902886 taaaaataaaagtatttttcagtccga-gtgcaatgtggtaatgcattatccagcaaagagacgatgccggtcgatagctattgtgatg 14902973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 48538245 - 48538170
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgat 213  Q
    |||||||||||||||||| ||||||| ||   ||||||||||| ||||||| | |||| |||||| ||||||||||    
T  48538245 taaaaataaaagtattttgcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgat 48538170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8880195 - 8880256
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagaga 199  Q
    |||| ||||||||| |||| || ||| |||||||| ||||||||||||||||| ||||||||    
T  8880195 taaatataaaagtaatttttagccccgagtgcaattttgtaatgcattatccagcaaagaga 8880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 25180949 - 25181005
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaa 195  Q
    ||||||| ||||||||||| || ||| || ||||||||||||||||||||||||||||    
T  25180949 taaaaattaaagtattttt-agccccgagcgcaatgttgtaatgcattatccaacaaa 25181005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 45460357 - 45460316
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    ||||||||||| |||||||||||||||||||||| |||||||    
T  45460357 caatgttgtaaagcattatccaacaaagagatgatgacgatc 45460316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 39219005 - 39219069
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||| |||||||||| |  | | |||||||||||||||||||||||  ||||||||||    
T  39219005 taaaaataaaaatatttttcagccataggcgcaatgttgtaatgcattatccagtaaagagatga 39219069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 48126008 - 48125928
Alignment:
Q  138 taaaaataaaagtatttttcagtccca-agtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    ||||||| |||||||||||||  |||| || ||||||||||||| ||||| ||| ||||||||||| ||||||| || |||||    
T  48126008 taaaaatgaaagtatttttca--cccagagcgcaatgttgtaatacattaaccagcaaagagatgatgacgatcaatgactat 48125928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 11198205 - 11198255
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatc 188  Q
    ||||||||||||||||| ||  |||| |||||||| |||||||||||||||    
T  11198205 taaaaataaaagtatttatcgatcccgagtgcaatattgtaatgcattatc 11198255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 5293724 - 5293679
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatgacgacgatcgat 213  Q
    ||||||||||||| |||||| || ||||||||||||| ||||||||    
T  5293724 gcaatgttgtaattcattatacagcaaagagatgacggcgatcgat 5293679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 856 - 928
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    |||||||||||||||||||||| |   ||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  856 taaaaataaaagtatttttcagccttgagtgcaatgttgtaatgcaatattcaataaagagatgacgacgatc 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 8545694 - 8545622
Alignment:
Q  138 taaaaataaaagtatttttcagtccca-agtgcaatgttgtaatgcattatccaacaaagagatgacgacgat 209  Q
    |||||||||||||||||||||| |||  || | ||||||||||||||||||||||||||||||||| ||||||    
T  8545694 taaaaataaaagtatttttcagcccccgagcgtaatgttgtaatgcattatccaacaaagagatgatgacgat 8545622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 29918351 - 29918398
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcatt 185  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  29918351 taaaaataaaagtatttgtcagtcctaagtgcaatgttgtaatgcatt 29918398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 35747540 - 35747458
Alignment:
Q  136 attaaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||| ||||||||||||||| |||  | ||||||||||| | ||||||||| ||||||||||| | |||||||| |||||    
T  35747540 attaaaaaaaaaagtatttttcag-ccctggagcaatgttgtattacattatccagcaaagagatgatggcgatcgatgactat 35747458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 12468531 - 12468497
Alignment:
Q  166 gtgcaatgttgtaatgcattatccaacaaagagat 200  Q
    |||||||||||||||||||||||||||||||||||    
T  12468531 gtgcaatgttgtaatgcattatccaacaaagagat 12468497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 14687246 - 14687327
Alignment:
Q  146 aaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatga 227  Q
    |||||||||||  | ||| ||||||||||||||||||||||| ||  |||||||||| |  |||||||| ||||| ||||||    
T  14687246 aaagtatttttttgccccgagtgcaatgttgtaatgcattatacagtaaagagatgatggtgatcgatagctataatgatga 14687327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 39379891 - 39379858
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||||||||||||||||||||||||||    
T  39379891 caatgttgtaatgcattatccaacaaagagatga 39379858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 9476348 - 9476296
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatcca 190  Q
    ||||||||| | |||||||||||||| || ||| |||||||||||||||||||    
T  9476348 taaaaataagattatttttcagtcccgagcgcagtgttgtaatgcattatcca 9476296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 6388846 - 6388787
Alignment:
Q  141 aaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagat 200  Q
    ||||||||||||||| ||  ||| || ||||||||||||||||||||||| |||| ||||    
T  6388846 aaataaaagtattttgcatccccgagcgcaatgttgtaatgcattatccagcaaaaagat 6388787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 18151278 - 18151313
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatgac 203  Q
    |||||||||||||| |||||||||||||||||||||    
T  18151278 gcaatgttgtaatgaattatccaacaaagagatgac 18151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 5793342 - 5793397
Alignment:
Q  145 aaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatg 201  Q
    |||||||||||||| ||||| |  ||||||||||| |||||||||| ||||||||||    
T  5793342 aaaagtatttttca-tcccaggatcaatgttgtaaggcattatccagcaaagagatg 5793397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 11473028 - 11472968
Alignment:
Q  165 agtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||    
T  11473028 agtgcaatgttgtaatgtattatccaacaaagagatgatgacgatcgatgactatggtgat 11472968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 35305749 - 35305675
Alignment:
Q  145 aaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||||||||| ||||   |||||||||||||| ||||||||||||||||||||| || ||||||| |||||    
T  35305749 aaaagtatttttcaatcccggatgcaatgttgtaatacattatccaacaaagagatgatgatgatcgatgactat 35305675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 37217753 - 37217817
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||||||||||| |||||| ||  |||||||||||||||||||||| ||| |||||||    
T  37217753 taaaaataaaagtattttttagtcccgagcacaatgttgtaatgcattatccagcaaggagatga 37217817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 31345275 - 31345362
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    ||||||||||||||||||||| || | || |||||| |||||||||||||  | ||||||||||| | |||||||| ||||| |||||    
T  31345275 taaaaataaaagtatttttcaatctcgagcgcaatgatgtaatgcattatatatcaaagagatgatggcgatcgatgactatggtgat 31345362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 4101291 - 4101378
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||| ||| || ||| ||||||||||| |||||||| || |||| |||||| || ||||||  ||||| ||||||    
T  4101291 taaaaataaaagtatttt-cagccctaagcgcaatgttgtattgcattattcagcaaaaagatgatgatgatcgacgactatggtgatg 4101378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 30999766 - 30999817
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||||||||| ||||||||||||| |||||| ||||||| || |||||    
T  30999766 gcaatgttgtaatgtattatccaacaaaaagatgatgacgatcaatgactat 30999817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 19440322 - 19440268
Alignment:
Q  171 atgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgat 225  Q
    |||||||||||||||||||| |||| |||||| ||||||| || ||||| |||||    
T  19440322 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactatggtgat 19440268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 29292447 - 29292501
Alignment:
Q  146 aaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagat 200  Q
    ||||||||||| || ||| ||   |||||||||||||||||||||||||||||||    
T  29292447 aaagtattttttaggcccgagcagaatgttgtaatgcattatccaacaaagagat 29292501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 5432312 - 5432255
Alignment:
Q  145 aaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||||||| ||| |   |||||||||||||||||||||  |||||||||||    
T  5432312 aaaagtatttttcagccccgaactcaatgttgtaatgcattatcctgcaaagagatga 5432255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 35074304 - 35074337
Alignment:
Q  161 cccaagtgcaatgttgtaatgcattatccaacaa 194  Q
    |||||| |||||||||||||||||||||||||||    
T  35074304 cccaagagcaatgttgtaatgcattatccaacaa 35074337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 3156837 - 3156901
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    |||||||| ||| |||| |||| ||| || | ||||||||||| ||||||||| |||||||||||    
T  3156837 taaaaatagaagcatttgtcagccccgagcgtaatgttgtaatacattatccagcaaagagatga 3156901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 9402349 - 9402413
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| |  ||||||||||    
T  9402349 taaaaataaaagtatttttcatccccaagtgcaatgttgtaatgcattatctagtaaagagatga 9402413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 24221361 - 24221424
Alignment:
Q  139 aaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    |||| |||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||    
T  24221361 aaaattaaaagtatttttcagccccaagcgcaattttataatgcattatccaacaaagagatga 24221424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 32959672 - 32959741
Alignment:
Q  141 aaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatc 210  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||  ||||| |||| |||||||    
T  32959672 aaataaaagtattttttagccccgagtgcaatgttgtaatgcattatccagtaaagaaatgatgacgatc 32959741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 8321139 - 8321050
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatga 227  Q
    |||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||  |||||||||| |  |||||||| ||||| ||||||    
T  8321139 taaaaatataagcatttttcagcccagagtgtaatgttgtaatgcattatccagtaaagagatgatggggatcgatagctataatgatga 8321050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 14321616 - 14321697
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||||||||||||||||| |   ||||||||||||||||||| |||  || |||||||||| ||||||| || |||||    
T  14321616 taaaaataaaagtatttttcagccttgagtgcaatgttgtaatgcaatattgaataaagagatgatgacgatcaatgactat 14321697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 1948135 - 1948071
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||||||| |||||| | |||| |||||  ||||||||||||||||||||| ||||||    
T  1948135 taaaaataaaagtatctttcagcctcaagcgcaatagtgtaatgcattatccaacaaaaagatga 1948071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 29340694 - 29340727
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatg 201  Q
    ||||||||||||||||||||||||||||||||||    
T  29340694 gcaatgttgtaatgcattatccaacaaagagatg 29340727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 29342225 - 29342192
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatg 201  Q
    ||||||||||||||||||||||||||||||||||    
T  29342225 gcaatgttgtaatgcattatccaacaaagagatg 29342192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 32054621 - 32054538
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaa--gagatgacgacgatcgataactat 219  Q
    |||||| | |||||||||| || | || || ||||||| |||||||||||||||||||  ||||||| ||||||||||| ||||    
T  32054621 taaaaaaagaagtatttttaagccacatgttcaatgttataatgcattatccaacaaagagagatgatgacgatcgatagctat 32054538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 256803 - 256748
Alignment:
Q  171 atgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||| |||| |||||| ||||||| || ||||| ||||||    
T  256803 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactatggtgatg 256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 20348811 - 20348861
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatc 188  Q
    ||||||||||||||||| |||  ||| |||||||||||||||| |||||||    
T  20348811 taaaaataaaagtatttgtcaaccccgagtgcaatgttgtaatacattatc 20348861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 373095 - 373043
Alignment:
Q  168 gcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactata 220  Q
    |||||||||||||||||||| |||||||  ||||| ||||||| || ||||||    
T  373095 gcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactata 373043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 2126966 - 2126902
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    ||||||||||||||||||| ||||   || ||||||||||||  ||||||| | |||||||||||    
T  2126966 taaaaataaaagtattttttagtcgagagcgcaatgttgtaacacattatctagcaaagagatga 2126902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 29340588 - 29340620
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatg 201  Q
    |||| ||||||||||||||||||||||||||||    
T  29340588 caattttgtaatgcattatccaacaaagagatg 29340620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 29342330 - 29342298
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatg 201  Q
    |||| ||||||||||||||||||||||||||||    
T  29342330 caattttgtaatgcattatccaacaaagagatg 29342298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 30236653 - 30236597
Alignment:
Q  163 caagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||| |||||||||||||| ||||| |||||||||||| | | |||||||| |||||    
T  30236653 caagcgcaatgttgtaatgtattattcaacaaagagataatggcgatcgatgactat 30236597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 30905113 - 30905049
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    |||| ||||||||||||||||  ||| || |||||||||||||||||||| ||||||||||||||    
T  30905113 taaatataaaagtatttttcaaccccgagcgcaatgttgtaatgcattattcaacaaagagatga 30905049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 26207031 - 26207100
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacg 207  Q
    |||||||||||||| |||||||||   ||| ||||||||||||| |||||| |  |||||||||| ||||    
T  26207031 taaaaataaaagtacttttcagtcgtgagttcaatgttgtaatgtattatctactaaagagatgatgacg 26207100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 34592933 - 34592982
Alignment:
Q  171 atgttgtaatgcattatccaacaaagagatgacgacgatcgataactata 220  Q
    ||||||||||||||||||||| |||||||||  |  ||||||||||||||    
T  34592933 atgttgtaatgcattatccaataaagagatggtggtgatcgataactata 34592982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 40890111 - 40890191
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgataactat 219  Q
    |||||||||||||||||||||  ||| | | ||||||||||||||||||||||  ||| ||||||  |||||| || |||||    
T  40890111 taaaaataaaagtatttttcaaccccgaat-caatgttgtaatgcattatccagtaaatagatgataacgatcaatgactat 40890191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 27252314 - 27252377
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatga 202  Q
    |||||||||||||||||| ||  ||| ||  ||||||| |||||||||||| |||||||||||||    
T  27252314 taaaaataaaagtatttt-catccccgagcacaatgttataatgcattatctaacaaagagatga 27252377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 4924 - 4849
Alignment:
Q  138 taaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgat 213  Q
    ||||||||||||||||||||| |  | || | ||||||||||||||||||||| ||||||||||| | ||||||||    
T  4924 taaaaataaaagtatttttcaatttcgagcgaaatgttgtaatgcattatccagcaaagagatgatggcgatcgat 4849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 17814 - 17740
Alignment:
Q  139 aaaaataaaagtatttttcagtcccaagtgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgat 213  Q
    ||||| ||||||||||||||| | |||| |||||||| | ||||||||||||  ||||||||||||| |||||||    
T  17814 aaaaaaaaaagtatttttcagcctcaagcgcaatgttattatgcattatccattaaagagatgacgatgatcgat 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 14642 - 14699
Alignment:
Q  169 caatgttgtaatgcattatccaacaaagagatgacgacgatcgataactatagtgatg 226  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||  |||| ||||||    
T  14642 caatgttgtaatgcattatccagcaaagagatgaagacgatcgatgtctatggtgatg 14699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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