View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2282_high_15 (Length: 237)
Name: NF2282_high_15
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48892439 - 48892658
Alignment:
| Q |
1 |
ttttcttcttctctagttgttcttgatttttgagctttttacttagatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcc |
100 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48892439 |
ttttcttcttctctatttgttcttgattttttagctttttacttagatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcc |
48892538 |
T |
|
| Q |
101 |
cgcaataagggaccatctattaccaataagtgaatgcattctgataataagatcatcttcttctggagttatgtttcctctctttatatctggtcttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48892539 |
cgcaataagggaccatctattaccaataagtgaatgcattctgataataagatcatcttcttctggagttatgtttcctctctttatatctggtcttaga |
48892638 |
T |
|
| Q |
201 |
tagttcatccatcttagtct |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48892639 |
tagttcatccatcttagtct |
48892658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 33928475 - 33928527
Alignment:
| Q |
30 |
ttgagctttttacttagatgtgtgttccagtaattctttatctcattatctgt |
82 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
33928475 |
ttgagctttttctttagatgtgtgttccaataattctttatatcattatctgt |
33928527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 9622136 - 9621961
Alignment:
| Q |
45 |
agatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcccgcaataagggaccatctattaccaataagtgaatgcattctga |
144 |
Q |
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||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |||| ||||||||| | ||| | |
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| T |
9622136 |
agatgtgtgttccagtagttctttatttcattgtctgttcgtcctggtaatcttccggctataagtgaccatctatttccaagaagtgaatgtaatctta |
9622037 |
T |
|
| Q |
145 |
taataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtct |
220 |
Q |
| |
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| || ||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
9622036 |
ttatgagatcatcttcttcttgagttatgttacctctctttatatctggtctaagataattcatccatctaagtct |
9621961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 27808626 - 27808559
Alignment:
| Q |
33 |
agctttttacttagatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcc |
100 |
Q |
| |
|
|||||| | |||| ||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
27808626 |
agctttcttcttatatgagtgttccaataattctttatctcattatctgttcttcctggtaatcttcc |
27808559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 50200020 - 50200061
Alignment:
| Q |
53 |
gttccagtaattctttatctcattatctgtacgtcctggtaa |
94 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
50200020 |
gttccaataattttttatctcattatctgtacgtcctggtaa |
50200061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 52071704 - 52071777
Alignment:
| Q |
147 |
ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtct |
220 |
Q |
| |
|
|||||||| ||||| |||| | |||||| |||||||| ||||||||||||||||| |||| |||||| ||||| |
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|
| T |
52071704 |
ataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtct |
52071777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 44674794 - 44674748
Alignment:
| Q |
51 |
gtgttccagtaattctttatctcattatctgtacgtcctggtaatct |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||||||||| |
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|
| T |
44674794 |
gtgttccagtaattcttgatctcattatctgttcttcctggtaatct |
44674748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 33695896 - 33695859
Alignment:
| Q |
45 |
agatgtgtgttccagtaattctttatctcattatctgt |
82 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
33695896 |
agatgagtgttccagaaattctttatctcattatctgt |
33695859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 3911903 - 3911866
Alignment:
| Q |
45 |
agatgtgtgttccagtaattctttatctcattatctgt |
82 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3911903 |
agatgtgtgttccaataattctttatctcattatctgt |
3911866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 1318448 - 1318506
Alignment:
| Q |
33 |
agctttttacttagatgtgtgttccagtaattctttatctcattatctgtacgtcctgg |
91 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||||||||||||| | |||||| |
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|
| T |
1318448 |
agctttttctttaaatgtgtgttccaaaaattctttatctcattatctgtccttcctgg |
1318506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 5113925 - 5113881
Alignment:
| Q |
51 |
gtgttccagtaattctttatctcattatctgtacgtcctggtaat |
95 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||||||| |
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|
| T |
5113925 |
gtgttccagtagttctttatatcattatccgttcgtcctggtaat |
5113881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 13344938 - 13344897
Alignment:
| Q |
53 |
gttccagtaattctttatctcattatctgtacgtcctggtaa |
94 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
13344938 |
gttccaatagttctttatctcattatctgttcgtcctggtaa |
13344897 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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