View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_high_18 (Length: 216)
Name: NF2282_high_18
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 32549000 - 32549186
Alignment:
| Q |
14 |
caaaggtagaacaatgaatttggttaaaatcctcattgctttcacctcattggatttctcatccaacaactttgaaggaccaataccaaaagaacttatg |
113 |
Q |
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| T |
32549000 |
caaaggtacaacaatgaatttggttaaaatcctcattgctttcacttcactggatttctcatccaacaactttgaaggaccaataccaaaagaacttatg |
32549099 |
T |
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| Q |
114 |
aatcttacagcacttcatgctcttaacttgtcacaaaatgctttctcaggtaagataccttcttctttaagcaatctccgacatctc |
200 |
Q |
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| T |
32549100 |
aatctttcagcacttcatgctcttaacttgtcacaaaatgctttctcaggtaagataccttcttctttaagcaatctccgatatctc |
32549186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 14559648 - 14559782
Alignment:
| Q |
28 |
tgaatttggttaaaatcctcattgctttcacctcattggatttctcatccaacaactttgaaggaccaataccaaaagaacttatgaatcttacagcact |
127 |
Q |
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| T |
14559648 |
tgaatttggctaaaattctcattgcctttacttcattggatttctcatccaacaaatttgatgggccaataccaatggagcttatgagtctcacagcact |
14559747 |
T |
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| Q |
128 |
tcatgctcttaacttgtcacaaaatgctttctcag |
162 |
Q |
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| T |
14559748 |
ccatgctcttaacttgtcacaaaatgctttctcag |
14559782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 14569436 - 14569552
Alignment:
| Q |
28 |
tgaatttggttaaaatcctcattgctttcacctcattggatttctcatccaa-----caactttgaaggaccaataccaaaagaacttatgaatcttaca |
122 |
Q |
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| T |
14569436 |
tgaatttggttaaaattctcgtttcctttacttccttggatttctcatccaatccaaccactttgaatggccaataacaaaggagcttatgagtctcaca |
14569535 |
T |
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| Q |
123 |
gcacttcatgctcttaa |
139 |
Q |
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| T |
14569536 |
gcactccatgctcttaa |
14569552 |
T |
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