View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_low_11 (Length: 251)
Name: NF2282_low_11
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 39085423 - 39085244
Alignment:
| Q |
1 |
tattttgttcttatgagagaaaataagggatgattatgaatgttgagctaacaaaaatactcaacatatgctt-ttttaagggg--nnnnnnnntactct |
97 |
Q |
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| T |
39085423 |
tattttgttcttatgaga--aaataagggatgattatgaatgttgagctaacaaaaatactcaacatatgctttttttaaggggaaaaaaaaaatactct |
39085326 |
T |
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| Q |
98 |
ac----atatgtgtcgaacaaaaattgtactactattattgttttgnnnnnnnacaatattttaattgaagcattataaaat |
175 |
Q |
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| T |
39085325 |
acatatatatgtgtcgaacaaaaattgcactactattattgttttgtttttttacaatattttaattgaagcattataaaat |
39085244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 39083639 - 39083566
Alignment:
| Q |
165 |
cattataaaatattattttcgatacatgagttgcacgggtgtagtactctggtaaagataagataactggtcct |
238 |
Q |
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| T |
39083639 |
cattataaaatattatttttgatacatgagttgcacgggtgtagtactctggtaaagataagataattggtcct |
39083566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 39089379 - 39089279
Alignment:
| Q |
111 |
acaaaaattgtactactattattgttttgnnnnnnnacaatattttaattgaagcattataaaatattattttcgatacatgagttgcacgggtgtagta |
210 |
Q |
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|||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
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| T |
39089379 |
acaaaaattgtactactattattgtttt-tctttttacaatttttaaattgaagcattacaaaatattatttctgatacatgagaagcacgggtgtagta |
39089281 |
T |
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| Q |
211 |
ct |
212 |
Q |
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|| |
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| T |
39089280 |
ct |
39089279 |
T |
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