View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2282_low_17 (Length: 236)

Name: NF2282_low_17
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2282_low_17
NF2282_low_17
[»] scaffold0256 (1 HSPs)
scaffold0256 (19-151)||(15123-15269)
[»] chr8 (7 HSPs)
chr8 (19-160)||(17602716-17602870)
chr8 (19-156)||(5478807-5478959)
chr8 (19-89)||(17607490-17607560)
chr8 (83-156)||(9784730-9784803)
chr8 (83-141)||(9786741-9786799)
chr8 (124-160)||(17607427-17607463)
chr8 (91-139)||(19152216-19152264)
[»] chr4 (5 HSPs)
chr4 (19-156)||(8569183-8569333)
chr4 (83-156)||(46449874-46449947)
chr4 (91-157)||(5892494-5892560)
chr4 (91-140)||(36396076-36396125)
chr4 (19-67)||(5892409-5892457)
[»] chr5 (3 HSPs)
chr5 (83-156)||(39897163-39897236)
chr5 (19-89)||(25725705-25725775)
chr5 (111-151)||(10664025-10664065)
[»] chr2 (1 HSPs)
chr2 (83-156)||(21712813-21712886)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-157)||(165518-165670)
[»] chr1 (6 HSPs)
chr1 (83-156)||(49116392-49116465)
chr1 (83-156)||(49120985-49121058)
chr1 (83-156)||(26623060-26623133)
chr1 (83-156)||(26627655-26627728)
chr1 (91-156)||(27958404-27958469)
chr1 (99-139)||(9834634-9834674)
[»] chr7 (3 HSPs)
chr7 (83-156)||(35933905-35933978)
chr7 (83-156)||(35938506-35938579)
chr7 (83-156)||(25453813-25453886)
[»] chr6 (1 HSPs)
chr6 (164-220)||(12096194-12096248)


Alignment Details
Target: scaffold0256 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 15269 - 15123
Alignment:
Q  19 tatttattattttgttcctagaaataagg-acataatttagaaattgattagtttccattatatataattat-------------atgtatagtcttgta 104  Q
    |||||||||  || ||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||             |||||||| ||||||    
T  15269 tatttattagcttattcctagaaataagggacataaattagaaattgatttgtttccattatatgtaattatttagtgtaattatatgtatagccttgta 15170  T
Q  105 acctctatatatacacaaagaataacaatgagaaaggtatcaagcca 151  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  15169 acctctatatatacacaaggaataacaatgagaaaggtatcaagcca 15123  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 17602870 - 17602716
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattata-------------tataattatatgtatagtcttgtaa 105  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||| ||||||| ||||             | |||||||||| |||| |||||||    
T  17602870 tatttattagtttgttcctagaaataaggacctaaatcagaaattgatttgtttccaatataagtaattatttagtgtaattatatggatagccttgtaa 17602771  T
Q  106 cctctatatatacacaaagaataacaatgagaaaggtatcaagccaatattcatg 160  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  17602770 cctctttatatacataaagaataacaatgagaaaggcatcaagccaatattcatg 17602716  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 5478959 - 5478807
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattata----------------tataattatatgtatagtcttg 102  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||  |||||||||||                | ||||||||||||||| | ||    
T  5478959 tatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatgtatagccctg 5478860  T
Q  103 taacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  5478859 taac-tctatatatacacaaggaataacaatgagaaaggcatcaagccattatt 5478807  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17607560 - 17607490
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattatatataattat 89  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||| ||||| |||||||    
T  17607560 tatttattagtttgttcctagaaataaggacataaatcagaaattgatttgtttccaatatatgtaattat 17607490  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 9784803 - 9784730
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||||||||| || |||||||||||||||||| || ||||||||| |||||||| ||||||||| ||||    
T  9784803 taattatatgtatagcctcgtaacctctatatatacataaggaataacaaggagaaaggcatcaagccattatt 9784730  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 9786799 - 9786741
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaagg 141  Q
    ||||||||||||||| ||||||| ||||||||||||| || ||||||||| ||||||||    
T  9786799 taattatatgtatagccttgtaatctctatatatacataaggaataacaaggagaaagg 9786741  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 17607463 - 17607427
Alignment:
Q  124 gaataacaatgagaaaggtatcaagccaatattcatg 160  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17607463 gaataacaatgagaaaggcatcaagccaatattcatg 17607427  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 19152264 - 19152216
Alignment:
Q  91 tgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaa 139  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| ||||||    
T  19152264 tgtatagccttgtaacctttatatatacacaaggaataacaacgagaaa 19152216  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 8569333 - 8569183
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattatatataattat-------------atgtatagtcttgtaa 105  Q
    ||||| ||| ||||||||||||||||||||||||| | | ||||||||| ||||||||||||| |||||||             |||||||| |||||||    
T  8569333 tatttgttagtttgttcctagaaataaggacataaatcaaaaattgatttgtttccattatatgtaattatgtagtgtaattatatgtatagccttgtaa 8569234  T
Q  106 cctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  8569233 cctctatatatacacaaggaataacaatgagaaaggcatcaagccattatt 8569183  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 46449947 - 46449874
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    |||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  46449947 taattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatt 46449874  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 5892494 - 5892560
Alignment:
Q  91 tgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatattc 157  Q
    ||||||| ||| |||  |||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  5892494 tgtatagccttataaaatctatatatacacaagaaataacaatgaaaaaggtatcaagccaatattc 5892560  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 36396125 - 36396076
Alignment:
Q  91 tgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaag 140  Q
    ||||||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  36396125 tgtatagccttgtaacctctgtatataaacaagaaataacaatgagaaag 36396076  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5892409 - 5892457
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgatt 67  Q
    ||||||||| |||||| ||||||||||||||| || | |||||||||||    
T  5892409 tatttattagtttgtttctagaaataaggacacaaatcagaaattgatt 5892457  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 39897236 - 39897163
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  39897236 taattatatgtatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatt 39897163  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 25725775 - 25725705
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattatatataattat 89  Q
    ||||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||||||||||| |||||||    
T  25725775 tatttattagtttgttcctagaaataaagacataaatcagaaattgatttgtttccattatatgtaattat 25725705  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 10664065 - 10664025
Alignment:
Q  111 atatatacacaaagaataacaatgagaaaggtatcaagcca 151  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  10664065 atatatatacgaagaataacaatgagaaaggtatcaagcca 10664025  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 21712813 - 21712886
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  21712813 taattatatgtataggcttgtaacccctatatatacacaaggaataacaatgagaaaggcatcaagccattatt 21712886  T

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Target: scaffold0012 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 165518 - 165670
Alignment:
Q  19 tatttattattttgttcctagaaataaggacataatttagaaattgattagtttccattatata--taattat------------atgtatagtcttgta 104  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||  |||||||             ||||||| ||||||    
T  165518 tatttattagtttgttcctagaaataaggacataaatcagaaattgatttgtttccaatatatatgtaattatttagtgtaattattgtatagccttgta 165617  T
Q  105 acctctatatatacacaaagaataacaatgagaaaggtatcaagccaatattc 157  Q
     ||||| |||||||| ||||||||||||||||||||| |||||| ||||||||    
T  165618 tcctctttatatacagaaagaataacaatgagaaaggcatcaagtcaatattc 165670  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 49116392 - 49116465
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| ||||||||| ||||    
T  49116392 taattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatt 49116465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 49120985 - 49121058
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| ||||||||| ||||    
T  49120985 taattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatt 49121058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 26623133 - 26623060
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||| ||  |||||||| |||||||| ||||||||| ||||    
T  26623133 taattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatt 26623060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 26627728 - 26627655
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||| ||  |||||||| |||||||| ||||||||| ||||    
T  26627728 taattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatt 26627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 27958404 - 27958469
Alignment:
Q  91 tgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatc-aagccaatatt 156  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  27958404 tgtatagccttgtaac-tctatatatacacaaggaataacaatgagaaaggcatcaaagccaatatt 27958469  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 9834634 - 9834674
Alignment:
Q  99 cttgtaacctctatatatacacaaagaataacaatgagaaa 139  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  9834634 cttgtaacctatatatatatacaaggaataacaatgagaaa 9834674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 35933978 - 35933905
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||| ||  |||||||| |||||||| ||||||||| ||||    
T  35933978 taattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatt 35933905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 35938579 - 35938506
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||| ||||| ||||||||||||||||||||| ||  |||||||| |||||||| ||||||||| ||||    
T  35938579 taattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatt 35938506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 25453886 - 25453813
Alignment:
Q  83 taattatatgtatagtcttgtaacctctatatatacacaaagaataacaatgagaaaggtatcaagccaatatt 156  Q
    ||||||||  ||||| ||||||||||||||||||||| ||  |||||||| |||||||| || |||||| ||||    
T  25453886 taattatagatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcattaagccattatt 25453813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 12096248 - 12096194
Alignment:
Q  164 atacatttctttctacatccatcaaagcgtataaaacttcactgagaaaccaattaa 220  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||    
T  12096248 atacatttgtttccacatccatcaaagc--ataaaacttcactgagaaaccaattaa 12096194  T

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