View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2282_low_18 (Length: 234)

Name: NF2282_low_18
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2282_low_18
NF2282_low_18
[»] chr6 (21 HSPs)
chr6 (1-221)||(5103564-5103784)
chr6 (5-221)||(5067811-5068027)
chr6 (8-190)||(5095220-5095402)
chr6 (5-190)||(5349425-5349610)
chr6 (5-185)||(5424801-5424981)
chr6 (8-203)||(5158179-5158374)
chr6 (5-169)||(5369533-5369697)
chr6 (1-182)||(5355326-5355507)
chr6 (5-143)||(5132623-5132761)
chr6 (1-183)||(5147591-5147773)
chr6 (11-182)||(5432596-5432767)
chr6 (9-179)||(5342817-5342987)
chr6 (9-142)||(5176048-5176181)
chr6 (9-142)||(5277875-5278008)
chr6 (4-143)||(5260849-5260982)
chr6 (5-69)||(5446254-5446318)
chr6 (9-77)||(5396243-5396311)
chr6 (9-79)||(5074512-5074582)
chr6 (9-75)||(5182682-5182748)
chr6 (4-141)||(5284849-5284980)
chr6 (102-139)||(5446345-5446382)
[»] chr4 (4 HSPs)
chr4 (9-79)||(4134579-4134649)
chr4 (9-79)||(4352462-4352532)
chr4 (9-79)||(4334725-4334795)
chr4 (9-77)||(4321789-4321857)
[»] chr5 (1 HSPs)
chr5 (9-143)||(8877043-8877177)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-76)||(9444-9519)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5103784 - 5103564
Alignment:
Q  1 tggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103784 tggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcat 5103685  T
Q  101 agagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttattttatccttcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103684 agagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttattttatccttcatg 5103585  T
Q  201 attcgttttcccttttcaaat 221  Q
    | |||||||||||||||||||    
T  5103584 agtcgttttcccttttcaaat 5103564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 5068027 - 5067811
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagag 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| ||||||||||| | |||||| ||||||    
T  5068027 gtaaaccttgatggagattttgaatatctttcgagaaatctgatatggctgtcttggaatggatgttgtttaccacatatacctgaaaacttttatagag 5067928  T
Q  105 aaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttattttatccttcatgattc 204  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||| || |||||||  |||||||||||||| |||    ||||||||||     
T  5067927 aaaatttagtttccatcgagttagagaatagcaatgtcaaacttttatggaaagtggcccaggtataagttttgatttcttttttggctcttcatgattt 5067828  T
Q  205 gttttcccttttcaaat 221  Q
    |||||| ||||||||||    
T  5067827 gttttcacttttcaaat 5067811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 5095220 - 5095402
Alignment:
Q  8 aaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||||| | | || ||    
T  5095220 aaacttgatggagattttgaatatctttcgagaaatctgagatggctgtcttggaatggattttctttaacacatatacctacaaacttttacaaaggaa 5095319  T
Q  108 atttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttatttt 190  Q
      || ||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||  |||||||||||||| ||||    
T  5095320 gcttggtttccatcgagttagagaatagcaatgtcaaacttttatggaaagaggcccaggtataagttttgatttcttttttt 5095402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 5349425 - 5349610
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagag 104  Q
    |||||||||||||||||||||||||||||||| | |||||||| || ||| |||||||| |||| || |||| |||||||||||   |||||| ||||||    
T  5349425 gtaaaacttgatggagattttgaatatctttcaaaaaatctgagatggctttcttggaacggatgttgtttaccacatatacctgcaaacttttatagag 5349524  T
Q  105 aaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttatttt 190  Q
    ||||||||||||||||||||||| ||||||||  |||||  |||||||||||||||| |||||||  |||||||||||||| ||||    
T  5349525 aaaatttagtttccatcgagttagagaatagccgtgtcaaacttttatggaaagaggcccaggtataagttttgatttcttttttt 5349610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 5424801 - 5424981
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagag 104  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||||  |||||| ||||||    
T  5424801 gtaaaacttaatggagattttaaatatctttcgagaaatctgagatggctgtcttggaatggatgttctttaccacatatacctacaaacttttatagag 5424900  T
Q  105 aaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttctt 185  Q
    || |||||||||||||||||||| |||||||| |||||   ||||| |||||||| | |||||||  | ||||||||||||    
T  5424901 aacatttagtttccatcgagttagagaatagccatgtccaacttttgtggaaagacggccaggtataacttttgatttctt 5424981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 5158374 - 5158179
Alignment:
Q  8 aaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaa 107  Q
    ||||||| |||||||||| ||||| ||||||||| ||||| || ||||||||||||| ||||||||| ||||||||||||||  |||||| ||| |||||    
T  5158374 aaacttgttggagattttaaatatatttcgagaagtctgagatggctgtcttggaatagattttcttcaacacatatacctacaaacttttatatagaaa 5158275  T
Q  108 atttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttcttattttatccttcatgatt 203  Q
    |||||||||||||||||||| ||||||||||| |||  |||||||||||||| | |||||||  ||||||||||| || ||||  | |||||||||    
T  5158274 atttagtttccatcgagttagagaatagcaatatcaaacttttatggaaagaagcccaggtataagttttgatttatttttttgcctttcatgatt 5158179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 5369533 - 5369697
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagag 104  Q
    |||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |||| |||||||||| |  || ||   |||||    
T  5369533 gtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcacatataccaacaaatttgtgtagag 5369632  T
Q  105 aaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 169  Q
    ||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| |||||||    
T  5369633 aaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 5369697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5355507 - 5355326
Alignment:
Q  1 tggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcat 100  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||  | |||||||||||||| |||| |||||||||||||||| |  ||| ||  |    
T  5355507 tggagtaaaacttgatggaaattttgaatgtctttcaagaaatctgaggtggctgtcttggaatgaatttcctttaacacatataccaacaaaccttttt 5355408  T
Q  101 agagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgattt 182  Q
      || ||||||||||||||| |||||| |||||||||||||||  ||| | |||||||||| ||||||| || |||| ||||    
T  5355407 ctaggaaatttagtttccatagagttagagaatagcaatgtcaaacttatgtggaaagaggcccaggtagtaatttttattt 5355326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 5132761 - 5132623
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagag 104  Q
    ||||||||||||||||||||||||   ||||| |||||||| | || | ||| ||||||||||||| ||||||||||||||||||   | ||| ||||||    
T  5132761 gtaaaacttgatggagattttgaaatcctttcaagaaatctaagatggttgtgttggaatggatttcctttaacacatatacctacagatttttatagag 5132662  T
Q  105 aaaatttagtttccatcgagttacagaatagcaatgtca 143  Q
    ||| ||||||||||||||||||| | |||||||||||||    
T  5132661 aaagtttagtttccatcgagttagaaaatagcaatgtca 5132623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5147773 - 5147591
Alignment:
Q  1 tggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcat 100  Q
    ||||||| |||||||||| |||||||||||  ||||||||||||||| || ||| ||||||||||||||| || |||||   ||||| |  | |||| ||    
T  5147773 tggagtacaacttgatggggattttgaatacatttcgagaaatctgagatggctttcttggaatggatttcctctaacatgcatacccacaagcttttat 5147674  T
Q  101 agagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgatttc 183  Q
      || ||||||||||||||| |||||| | ||||||||| |||  ||| | ||||||||   ||||||| || ||||||||||    
T  5147673 ctaggaaatttagtttccattgagttagaaaatagcaatatcaaacttctgtggaaagaaacccaggtattaattttgatttc 5147591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 5432596 - 5432767
Alignment:
Q  11 cttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaaatt 110  Q
    ||||||||  |||||||| ||||||| |||||||||| || ||| ||||||||||||||| | ||| ||   |||||||  |||||| ||  || |||||    
T  5432596 cttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatggatttccgttatcatgcatacctacaaacttttatcaagcaaatt 5432695  T
Q  111 tagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttgattt 182  Q
    ||||||||||||||||| | || || |||||||    ||| |||||||||  ||||||| ||| ||||||||    
T  5432696 tagtttccatcgagttagaaaacagtaatgtcaaagatttgtggaaagagacccaggtattaggtttgattt 5432767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 5342817 - 5342987
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaaa 108  Q
    ||||||||||||||||||| |||||||| ||||| || | || ||| | ||||||||||||| |||||| |   |||||||| |||||| ||  || |||    
T  5342817 aacttgatggagattttgactatctttctagaaaactaagatggctatgttggaatggatttcctttaagatgcatacctaaaaactttgatcaaggaaa 5342916  T
Q  109 tttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggtaatagttttga 179  Q
    |||||||||||| |||||  | || |||| |||||  ||| | ||||||||| || ||||| || ||||||    
T  5342917 tttagtttccatggagtttgaaaacagcagtgtcaaacttctgtggaaagagaacaaggtattaattttga 5342987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 5176048 - 5176181
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaaa 108  Q
    |||||||||| |||||||| |||||||| |||||||||| || ||| ||||||||||||||| ||||| ||   || |||   | |||| ||  || |||    
T  5176048 aacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttcctttatcatgcattccttcaagcttttatcaaggaaa 5176147  T
Q  109 tttagtttccatcgagttacagaatagcaatgtc 142  Q
    ||||||||||||||||||| | || |||||||||    
T  5176148 tttagtttccatcgagttagaaaacagcaatgtc 5176181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 5277875 - 5278008
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaaa 108  Q
    |||||||||| |||||||| |||||||| |||||||||| || ||| ||||||||||||||| ||||| ||   || |||   | |||| ||  || |||    
T  5277875 aacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttcctttatcatgcattccttcaagcttttatcaaggaaa 5277974  T
Q  109 tttagtttccatcgagttacagaatagcaatgtc 142  Q
    ||||||||||||||||||| | || |||||||||    
T  5277975 tttagtttccatcgagttagaaaacagcaatgtc 5278008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 5260982 - 5260849
Alignment:
Q  4 agtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcataga 103  Q
    ||||||||||||||| |||||||||||| |||| ||| || ||| | ||||||| |||||||||      ||||  || |||||||  |||||  || ||    
T  5260982 agtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga------ttaagtcacatacctacaaacttctatgga 5260889  T
Q  104 gaaaatttagtttccatcgagttacagaatagcaatgtca 143  Q
    |||||||||||||||||||||||| |||| | ||||||||    
T  5260888 gaaaatttagtttccatcgagttagagaacatcaatgtca 5260849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5446254 - 5446318
Alignment:
Q  5 gtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 69  Q
    ||||||||||||||||||||||||||| |||||||| |||| | || |||||| |||||||||||    
T  5446254 gtaaaacttgatggagattttgaatatgtttcgagagatctaacatggctgtcatggaatggatt 5446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 5396243 - 5396311
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 77  Q
    |||||||||| ||||||||||||||||| |||||| ||| || ||| |||||||||| |||| ||||||    
T  5396243 aacttgatggtgattttgaatatctttcaagaaatgtgagatggctttcttggaatgcatttcctttaa 5396311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 5074582 - 5074512
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaaca 79  Q
    |||||||||| ||||||||| ||||||| |||||| ||| || ||| || |||||||||||| ||||||||    
T  5074582 aacttgatggggattttgaacatctttcaagaaatttgagatggctttcatggaatggatttcctttaaca 5074512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 5182748 - 5182682
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttcttt 75  Q
    ||||||| || || |||||||||||||| |||||||||| || ||| ||||||||||||||| ||||    
T  5182748 aacttgagggggactttgaatatctttcaagaaatctgatatggctttcttggaatggatttccttt 5182682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 5284980 - 5284849
Alignment:
Q  4 agtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcataga 103  Q
    ||||||||||||||| |||||||||||| |||| ||| || ||| | ||||||| |||||||||      ||||  ||||||||||  |||||  || ||    
T  5284980 agtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga------ttaagtcatatacctacaaacttctatgga 5284887  T
Q  104 gaaaatttagtttccatcgagttacagaatagcaatgt 141  Q
    ||||||||| ||||||| |||||| |||| | ||||||    
T  5284886 gaaaatttaatttccattgagttagagaacatcaatgt 5284849  T

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Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 5446345 - 5446382
Alignment:
Q  102 gagaaaatttagtttccatcgagttacagaatagcaat 139  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5446345 gagaaaatttagtttccatcgagttagagaatagcaat 5446382  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 4134649 - 4134579
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaaca 79  Q
    ||||||||||||||||| |||||||||| |||||| ||| || ||||| |||||||| |||| ||||||||    
T  4134649 aacttgatggagattttaaatatctttcaagaaatttgagatggctgtgttggaatgaatttcctttaaca 4134579  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 4352462 - 4352532
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaaca 79  Q
    ||||||||||||||||| |||||||||| |||||| |||||| ||||   |||||||||||| ||||||||    
T  4352462 aacttgatggagattttaaatatctttcaagaaatttgaaatggctgcactggaatggatttcctttaaca 4352532  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 4334725 - 4334795
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaaca 79  Q
    ||||||||||||||||| |||||||||| |||||  ||| || ||||   |||||||||||| ||||||||    
T  4334725 aacttgatggagattttaaatatctttccagaaagttgagatggctgcactggaatggatttcctttaaca 4334795  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 4321857 - 4321789
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 77  Q
    ||||||||||||||||| ||||| |||| |||||| | |||| ||||   |||||||||||| ||||||    
T  4321857 aacttgatggagattttaaatatatttcaagaaatttaaaatggctgcactggaatggatttcctttaa 4321789  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 8877043 - 8877177
Alignment:
Q  9 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaacacatatacctaataactttcatagagaaaa 108  Q
    ||||||||||| | ||||||| |||||| | |||||||| |||| | |||||||||| |||| |||||||    |||||||   ||||| ||  ||||||    
T  8877043 aacttgatggaaactttgaatttctttccaaaaatctgagattgttatcttggaatgcatttcctttaacctgcatacctaccgacttttatcaagaaaa 8877142  T
Q  109 tttagtttccatcgagttacagaatagcaatgtca 143  Q
    ||| || || ||||||||| | |||||||||||||    
T  8877143 tttggtatctatcgagttagaaaatagcaatgtca 8877177  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9519 - 9444
Alignment:
Q  1 tggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttcttta 76  Q
    ||||||| |||||||||||||||| || |||||||| ||||| || | || ||||| |||||| |||||| |||||    
T  9519 tggagtacaacttgatggagatttcgagtatctttcaagaaaactaagatggctgtgttggaaaggatttccttta 9444  T

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