View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_low_2 (Length: 515)
Name: NF2282_low_2
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 496
Target Start/End: Original strand, 52696979 - 52697465
Alignment:
| Q |
13 |
aatataaaaaagtttgattcagaaagaaaaaatgtataatgctactttaaactactagcagtatttcacaaactttacaaatgggttatcacaagtagga |
112 |
Q |
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| T |
52696979 |
aatataaaaaagtttgattcagaaagaaaaaatgta--atgctactttaaactactagcagtatttcacaaactttacaaatgggttatcacaagtagga |
52697076 |
T |
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| Q |
113 |
atatcaagtcaagatagagcttt-----gagtcgaacgcagagtcctagttgaaacaaacactctaaaggatcagagtcgtatacacgtaagtattcgtc |
207 |
Q |
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| T |
52697077 |
atatcaagtcaagatagagctttaatttgagtcgaacgcagaatcctagttgaaacaaacactctataggatcagagtcgtatacacgtaagtattcgtc |
52697176 |
T |
|
| Q |
208 |
ttcccatgtatttgatacctctcattcttcgtttatttgaacattaaaatactaacaccatagtgttttttatcttctacaatttatacgtgtttaaaaa |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52697177 |
ttcccatgtatttgatacctctcattctttgtttatttgaacattaaaatactaacaccatagtgttttttatcttctacaatttatacgtgtttaaaaa |
52697276 |
T |
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| Q |
308 |
atgcacataaaaactaaagaatatggtattggacatcaaaattttgatctcaaaatatcatttctctactcatttcaataaataagaacgtggcaatata |
407 |
Q |
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| T |
52697277 |
atgcacataaaaactaaagaatatggtattggacatcaaaattttgatctcaaaatatcatttctctactcatttcaataaataagaacgtggcaatata |
52697376 |
T |
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| Q |
408 |
ttgagggtaattaaaattgcctcctctgctgtgtttgctggtcagaatattttttgattggctactttgaattagtaagagtttcgcga |
496 |
Q |
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| T |
52697377 |
ttgagggtaattaaaattgcctcctctgctgtgtttgctggtcagaatattttttgattggctactttgaattcgtaagagtttcgcga |
52697465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 27769269 - 27769318
Alignment:
| Q |
314 |
ataaaaactaaagaatatggtattggacatcaaaattttgatctcaaaat |
363 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
27769269 |
ataaaaattaaaagatatggtatttgacatcaaaattttgatctcaaaat |
27769318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 26631755 - 26631795
Alignment:
| Q |
334 |
tattggacatcaaaattttgatctcaaaatatcatttctct |
374 |
Q |
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| T |
26631755 |
tatttgacatcaaaatttcgatgtcaaaatatcatttctct |
26631795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 18433718 - 18433662
Alignment:
| Q |
314 |
ataaaaactaaagaatatggtattggacatcaaaattttgatctcaaaatatcattt |
370 |
Q |
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||||||| ||||||||| ||||| ||||||||||||||||| | ||||||| |||| |
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| T |
18433718 |
ataaaaatcaaagaatattgtatttgacatcaaaattttgatgttaaaatataattt |
18433662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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