View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_low_3 (Length: 450)
Name: NF2282_low_3
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 80 - 345
Target Start/End: Complemental strand, 33702919 - 33702653
Alignment:
| Q |
80 |
tgatttgtgacacatcattacattaaccaaagaaaaatgtcttgaaagaa-tattattactgcttatttttaatgtaacagacagtaatcgtgtcttctg |
178 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||| ||||||| |
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| T |
33702919 |
tgatttgtgacacatcattacattagcaaaagaaaaatgtcttgaaagaaatattatttctacatatttttaatgtaacagacagtaatcgtttcttctg |
33702820 |
T |
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| Q |
179 |
ttgagtacaaacagtactctggaaaatgtacaagctaaagtctgaacaccaaatctaaaaaagtgcattgttaaaatatagccccaaaaggaaataacgg |
278 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33702819 |
ttgagtacaaacagtactctgaaaaatgtacaagctaaagtctgaacaccaaatctaaaaaagtgcattgttaaaatatagccccagaaggaaataacgg |
33702720 |
T |
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| Q |
279 |
ttataaccgctaaaaataaggttcccatttctagacaccgacactcggccaaagtttgacattttat |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33702719 |
ttataaccgctaaaaataaggttcccatttctagacaccgacactcggccaaagtttgacattttat |
33702653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 80 - 345
Target Start/End: Complemental strand, 33715212 - 33714946
Alignment:
| Q |
80 |
tgatttgtgacacatcattacattaaccaaagaaaaatgtcttgaaagaa-tattattactgcttatttttaatgtaacagacagtaatcgtgtcttctg |
178 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| || | |||||||||||||| ||||||||||||| ||||||| |
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| T |
33715212 |
tgatttgtgacacatcattacattagcaaaagaaaaatgtcttgaaagaaatattatttctacatatttttaatgtaaaagacagtaatcgtttcttctg |
33715113 |
T |
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| Q |
179 |
ttgagtacaaacagtactctggaaaatgtacaagctaaagtctgaacaccaaatctaaaaaagtgcattgttaaaatatagccccaaaaggaaataacgg |
278 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33715112 |
ttgagtacaaacagtactctgaaaaatgtacaagctaaagtctgaacaccaaatctaaaaaagtgcattgttaaaatatagccccagaaggaaataacgg |
33715013 |
T |
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| Q |
279 |
ttataaccgctaaaaataaggttcccatttctagacaccgacactcggccaaagtttgacattttat |
345 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33715012 |
ttataaccgctaaaattaaggttcccatttctagacaccgacactcggtcaaagtttgacattttat |
33714946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 35349804 - 35349849
Alignment:
| Q |
377 |
taacggataattggttctcgttgcctcgcgtcacttcgttcctacc |
422 |
Q |
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| T |
35349804 |
taacggataattggttatcgttgcctcgcgtcacttcgttcctacc |
35349849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33702981 - 33702940
Alignment:
| Q |
19 |
aaatctaaaggggggtgtggttcaaggaagaacacgtaccac |
60 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33702981 |
aaatctaaaggggggtgtggttcaaggaagaacacgtcccac |
33702940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33715274 - 33715233
Alignment:
| Q |
19 |
aaatctaaaggggggtgtggttcaaggaagaacacgtaccac |
60 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33715274 |
aaatctaaaggggggtgtggttcaaggaagaacacgtcccac |
33715233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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