View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2282_low_7 (Length: 348)
Name: NF2282_low_7
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2282_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 37324521 - 37324831
Alignment:
| Q |
16 |
gtttctacccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324521 |
gtttctacccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaa |
37324620 |
T |
|
| Q |
116 |
gtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324621 |
gtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcat |
37324720 |
T |
|
| Q |
216 |
tttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttc |
315 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
37324721 |
tttttaccttgccattaggctcagctataaataccatgcttggttttggtcccgacacaatgtcatgaaagtaaaagtgaaggtgagtgaatttctcttc |
37324820 |
T |
|
| Q |
316 |
ttgaaaaccca |
326 |
Q |
| |
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||||||||||| |
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| T |
37324821 |
ttgaaaaccca |
37324831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 37316962 - 37317272
Alignment:
| Q |
17 |
tttctacccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagagg |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
37316962 |
tttctacccaatatgctaagtgtgcttccattgaaatctccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaag |
37317061 |
T |
|
| Q |
117 |
tgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
37317062 |
tgtaaattccttgagccttacccacaagtttcgagtcacgttcaggaccagcagtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatt |
37317161 |
T |
|
| Q |
217 |
ttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttct |
316 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37317162 |
ttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttct |
37317261 |
T |
|
| Q |
317 |
tgaaaacccaa |
327 |
Q |
| |
|
||||||||||| |
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|
| T |
37317262 |
tgaaaacccaa |
37317272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 37320541 - 37320850
Alignment:
| Q |
17 |
tttctacccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320541 |
tttctacccaatatgctaagtgtgcttccattgaaatgtccatcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagagg |
37320640 |
T |
|
| Q |
117 |
tgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| |
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| T |
37320641 |
tgtaaattccttgagccttacccacaagttttgattcacgttcgggtccagccgtcaaggggtcatccatcgccacaactgtcccgaatggcaaggcatt |
37320740 |
T |
|
| Q |
217 |
ttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttct |
316 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320741 |
ttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttct |
37320840 |
T |
|
| Q |
317 |
tgaaaaccca |
326 |
Q |
| |
|
|||||||||| |
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|
| T |
37320841 |
tgaaaaccca |
37320850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 37306624 - 37306927
Alignment:
| Q |
24 |
ccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaat |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||| || | ||| ||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |
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| T |
37306624 |
ccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaat |
37306723 |
T |
|
| Q |
124 |
tccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttacc |
223 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| |||||| |||||| ||||| ||||||||||| || ||||||||||| | | |||| || |
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| T |
37306724 |
tccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtcaacggatcatccatggccaccactgtcccgaatggaagagagttttcagcc |
37306823 |
T |
|
| Q |
224 |
ttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaac |
323 |
Q |
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||||| || ||||| ||||| | || |||||| ||| || ||| || | |||||| || || || |||||||| |||||||||||||||||||||| |
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| T |
37306824 |
ttgccgttgggctcggctactatcactgtgcttgctttggggccttccataacgtcgtggaaatagaagtgaaggtgggtgaatttctcttcttgaaaac |
37306923 |
T |
|
| Q |
324 |
ccaa |
327 |
Q |
| |
|
|||| |
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|
| T |
37306924 |
ccaa |
37306927 |
T |
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