View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2282_low_8 (Length: 343)

Name: NF2282_low_8
Description: NF2282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2282_low_8
NF2282_low_8
[»] chr1 (23 HSPs)
chr1 (18-340)||(9097064-9097383)
chr1 (18-339)||(9105245-9105566)
chr1 (18-252)||(9056183-9056417)
chr1 (18-140)||(9082793-9082915)
chr1 (21-143)||(9143128-9143250)
chr1 (21-142)||(8874325-8874446)
chr1 (21-142)||(8964244-8964365)
chr1 (24-121)||(9454087-9454184)
chr1 (21-121)||(9433097-9433197)
chr1 (21-121)||(9486449-9486549)
chr1 (21-114)||(8999423-8999516)
chr1 (18-121)||(8931851-8931954)
chr1 (21-100)||(9399403-9399482)
chr1 (24-97)||(9255288-9255361)
chr1 (24-141)||(9318550-9318667)
chr1 (24-141)||(9319635-9319752)
chr1 (24-141)||(9349952-9350069)
chr1 (18-98)||(8955796-8955876)
chr1 (21-101)||(9152681-9152761)
chr1 (24-95)||(8941793-8941864)
chr1 (21-88)||(9234319-9234386)
chr1 (24-98)||(8920469-8920543)
chr1 (22-88)||(9384008-9384074)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 9097064 - 9097383
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccag 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9097064 gctctttggtgtatacaattgaagccaaatgatcgcccctcaatgagtaaagtagttgaaatgcttgacggagatattgaaagcatagaaatgcctccag 9097163  T
Q  118 agcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttctagcgattcggggga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  9097164 agcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttctagcgatttggagga 9097263  T
Q  218 aaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatcaaaaatacttgttcttttgtaattctactatt 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||    
T  9097264 aaacatgagtaatcctctattagagaatacttcttgagttcttgacacttgttagaatccatcatatc---aatacttgttcttttgtaattctactctt 9097360  T
Q  318 ccattctgtgcagtgtccctaaa 340  Q
    ||||||||| |||||||||||||    
T  9097361 ccattctgttcagtgtccctaaa 9097383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 9105245 - 9105566
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccag 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  9105245 gctctttggtgtatacaactgaagccgaatgatcgcccctcaatgagtaaagtagttgaaatgcttgaaggaaatattgaacgcatagaaatgcctccag 9105344  T
Q  118 agcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttctagcgattcggggga 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||  |||| |||||||||||||||||||| |||||    
T  9105345 agcccaccatgtatccagatgaaacaatttcaagagatgaaacaaccagcttcgaccaaacaacatcaggtgatttcattagttctagcgattcagggga 9105444  T
Q  218 aaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatcaaaaatacttgttcttttgtaattctactatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||    
T  9105445 aaacatgagtaatcctctattagagaatacttcttgacttcttgacacttgttagaatccatcatatctaaaacacttgtttttttgtaattctactctt 9105544  T
Q  318 ccattctgtgcagtgtccctaa 339  Q
    |||||||||  |||||||||||    
T  9105545 ccattctgtttagtgtccctaa 9105566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 9056417 - 9056183
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccag 117  Q
    |||||||||||||||||| | || || || ||||||||||| |||| ||||||||| || |||||||||||||||||||||| | | ||||||||| | |    
T  9056417 gctctttggtgtatacaaattaacccaaacgatcgcccctccatgagtaaagtagtggagatgcttgaaggagatattgaaaaccttgaaatgccttcgg 9056318  T
Q  118 agcccaccatgtatccagatgaaacaatttcaagaggtgaaacaaccaacttagaccaaacaacatccagtgacttcattagttctagcgattcggggga 217  Q
    |||| ||  |||||||||||||||  ||||||   | ||||||||||||||  ||||||| |  ||| |||||||||||||||||||| |||   |||||    
T  9056317 agccaactttgtatccagatgaaatgatttcatcggatgaaacaaccaactccgaccaaagagtatcaagtgacttcattagttctagtgatattgggga 9056218  T
Q  218 aaacatgagtaatcctctattagagaatacttctt 252  Q
    |||||| | || ||||  | ||||||||| |||||    
T  9056217 aaacataactagtccttcactagagaatatttctt 9056183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 9082793 - 9082915
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccag 117  Q
    ||||||||||||||||||||||| || |||||||| || || |||| || |||||| || ||||||||||||||||||||||   | |||||||||||||    
T  9082793 gctctttggtgtatacaattgaaaccaaatgatcgtccttcgatgagtagagtagtggagatgcttgaaggagatattgaaactcttgaaatgcctccag 9082892  T
Q  118 agcccaccatgtatccagatgaa 140  Q
    | || ||||||||||||||||||    
T  9082893 aaccaaccatgtatccagatgaa 9082915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 9143128 - 9143250
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagc 120  Q
    |||||||||||||||||||| ||   |||||||||||||||||| |||||||| || ||||| ||||||||| |||||||| | |||||||||||| |||    
T  9143128 ctttggtgtatacaattgaaaccagctgatcgcccctcaatgaacaaagtagtggagatgctcgaaggagatgttgaaagccttgaaatgcctccaaagc 9143227  T
Q  121 ccaccatgtatccagatgaaaca 143  Q
    | | ||| |||||| ||||||||    
T  9143228 caatcatttatccacatgaaaca 9143250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 8874325 - 8874446
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagc 120  Q
    |||||||||||||||||||| ||  |||||||||| |||||||  || ||||| || ||||| ||||||||| |||||||| | |||||||||||| |||    
T  8874325 ctttggtgtatacaattgaaaccagatgatcgcccttcaatgatcaaggtagtggagatgctcgaaggagatgttgaaagccttgaaatgcctccaaagc 8874424  T
Q  121 ccaccatgtatccagatgaaac 142  Q
    | ||| | |||||| |||||||    
T  8874425 caaccctttatccacatgaaac 8874446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 8964365 - 8964244
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagc 120  Q
    |||||||||||||| ||||| ||   |||||||||||||||||| || ||||| || ||||| ||||||||| |||||||| | |||||||||||| |||    
T  8964365 ctttggtgtatacagttgaaaccagttgatcgcccctcaatgaacaaggtagtggagatgctcgaaggagatgttgaaagccttgaaatgcctccaaagc 8964266  T
Q  121 ccaccatgtatccagatgaaac 142  Q
    | | | | |||||| |||||||    
T  8964265 caatcctttatccacatgaaac 8964244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 9454087 - 9454184
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagcc 121  Q
    ||||||||||| ||||| || | |||||| || |||||||| |||||||| || ||||||||||||||||||||||  || |||||||||||| ||||    
T  9454087 tggtgtatacagttgaaacccattgatcgtccttcaatgaaaaaagtagtagagatgcttgaaggagatattgaaaatatggaaatgcctccaaagcc 9454184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 9433097 - 9433197
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagc 120  Q
    |||||||||||||| ||||| ||   |||||| || |||||||| |||||||| || ||||||||||||||||||||||  || |||||||||||| |||    
T  9433097 ctttggtgtatacagttgaaacccgttgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattgaaaatattgaaatgcctccaaagc 9433196  T
Q  121 c 121  Q
    |    
T  9433197 c 9433197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 9486449 - 9486549
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagc 120  Q
    |||||||||||||| ||||| || | |||||| || |||||||| |||||||| || ||||||||||||||||||||||  || ||||| |||||| |||    
T  9486449 ctttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattgaaaatattgaaatacctccaaagc 9486548  T
Q  121 c 121  Q
    |    
T  9486549 c 9486549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 8999516 - 8999423
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctc 114  Q
    |||||||||||||||||||  ||  ||||||||||||||||||  |||||||| || ||||| ||||||||| | |||||| | ||||||||||    
T  8999516 ctttggtgtatacaattgacaccagatgatcgcccctcaatgagcaaagtagtggagatgctcgaaggagatgtagaaagccttgaaatgcctc 8999423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 8931954 - 8931851
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccag 117  Q
    ||||| ||||||||||||||||| || | |||||| || |||||| | | |||| | ||||||||||||||||||||||||  ||| ||||| ||||||     
T  8931954 gctctgtggtgtatacaattgaaccctattgatcgtccttcaatggacagagtaatagaaatgcttgaaggagatattgaagacattgaaattcctccaa 8931855  T
Q  118 agcc 121  Q
    ||||    
T  8931854 agcc 8931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 9399482 - 9399403
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaag 100  Q
    |||||||||||||| ||||| || | |||||| || |||||||| |||||||| || ||||||||||| |||||||||||    
T  9399482 ctttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggggatattgaaag 9399403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 9255288 - 9255361
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattga 97  Q
    ||||||||||||||||| ||   |||||| |||||||||||||||||  | || ||||||||||||||||||||    
T  9255288 tggtgtatacaattgaaaccatgtgatcgtccctcaatgaataaagtgatagagatgcttgaaggagatattga 9255361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 9318550 - 9318667
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagccca 123  Q
    ||||||||||||||||| ||   |||||| || |||||||| |||||  | || |||||||||||| |||||||||  || |||||||||||| |||||     
T  9318550 tggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccct 9318649  T
Q  124 ccatgtatccagatgaaa 141  Q
    |  |||||||| ||||||    
T  9318650 ctttgtatccaaatgaaa 9318667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 9319752 - 9319635
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagccca 123  Q
    ||||||||||||||||| ||   |||||| || |||||||| |||||  | || |||||||||||| |||||||||  || |||||||||||| |||||     
T  9319752 tggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccct 9319653  T
Q  124 ccatgtatccagatgaaa 141  Q
    |  |||||||| ||||||    
T  9319652 ctttgtatccaaatgaaa 9319635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 9350069 - 9349952
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagcatagaaatgcctccagagccca 123  Q
    ||||||||||||||||| ||   |||||| || |||||||| |||||  | || |||||||||||| |||||||||  || |||||||||||| |||||     
T  9350069 tggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccct 9349970  T
Q  124 ccatgtatccagatgaaa 141  Q
    |  |||||||| ||||||    
T  9349969 ctttgtatccaaatgaaa 9349952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 8955876 - 8955796
Alignment:
Q  18 gctctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaa 98  Q
    ||||| ||||||||||||||||| || | |||||| || |||||| | | |||| | ||||||||||||||||||||||||    
T  8955876 gctctgtggtgtatacaattgaaccctattgatcgtccttcaatggacagagtaatagaaatgcttgaaggagatattgaa 8955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 9152681 - 9152761
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaaagc 101  Q
    |||||||||||||||||||| ||  ||||| | ||||||||||  ||||||||  | |||||||||| |||||||||||||    
T  9152681 ctttggtgtatacaattgaaaccatatgattgtccctcaatgagcaaagtagtgtagatgcttgaagaagatattgaaagc 9152761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 8941864 - 8941793
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatatt 95  Q
    |||||||||||||||||||| ||||| || || |||||| | |||||| | ||||||||||||| |||||||    
T  8941864 tggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagatatt 8941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9234319 - 9234386
Alignment:
Q  21 ctttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaagg 88  Q
    ||||||||||| || ||||| |||| |||||| || |||||||| ||||||||||| |||||||||||    
T  9234319 ctttggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgcttgaagg 9234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 8920543 - 8920469
Alignment:
Q  24 tggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaaggagatattgaa 98  Q
    ||||||||||||||||| || | |||||| || |||||| | | |||| | ||||||||||||||||||||||||    
T  8920543 tggtgtatacaattgaaccctattgatcgtccttcaatgtacagagtaatagaaatgcttgaaggagatattgaa 8920469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 9384074 - 9384008
Alignment:
Q  22 tttggtgtatacaattgaagccgaatgatcgcccctcaatgaataaagtagttgaaatgcttgaagg 88  Q
    |||||||||| || ||||| |||| |||||| ||  ||||||| ||||||||||| |||||||||||    
T  9384074 tttggtgtattcagttgaaaccgagtgatcgtcctacaatgaacaaagtagttgagatgcttgaagg 9384008  T

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