View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2283_high_13 (Length: 238)
Name: NF2283_high_13
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1459435 - 1459652
Alignment:
| Q |
1 |
ttggctaatggggatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaata |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1459435 |
ttggctaatggtgatggaaggcctcctgattggcaagactttgtcggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaaca |
1459534 |
T |
|
| Q |
101 |
atgccggcaacgctgccgccgctctcatggctggtttagctcccaaggctaaggtttgtttcaaaattttacttctctttactaactcatatcatatcat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
1459535 |
atgccggcaacgctgccgctgctctcatggctggtttagctcccaaggctaaggtttgtttgaaaattttacttctctttactaac-----tcatatcat |
1459629 |
T |
|
| Q |
201 |
tgcaaataaatcacagttctctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1459630 |
tgcaaataaatcacagttctctt |
1459652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 1499308 - 1499163
Alignment:
| Q |
1 |
ttggctaatggggatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaata |
100 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| | || |||||||| ||||| |||||||||||||||||||| | |
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| T |
1499308 |
ttggctaatggaagtggaaggccccctgattggcaagactttgtcggaatcattgctttgttagtcatcaattccacaatcagtttcattgaagaaaaca |
1499209 |
T |
|
| Q |
101 |
atgccggcaacgctgccgccgctctcatggctggtttagctcccaa |
146 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
1499208 |
atgccggcaatgccgccgctgctctcatggctggtttagctcccaa |
1499163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26787305 - 26787461
Alignment:
| Q |
1 |
ttggctaatggggatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaata |
100 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| | |
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| T |
26787305 |
ttggctaatggtgatggaaggccccctgattggcaagactttgttggaatcattgctcttttgatcatcaatgccaccatcagtttcattgaagaaaaca |
26787404 |
T |
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| Q |
101 |
atgccggcaacgctgccgccgctctcatggctggtttagctcccaaggctaaggttt |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26787405 |
atgccggcaacgctgccgccgctctcatggctggtttagctcctaaggccaaggttt |
26787461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 50273421 - 50273566
Alignment:
| Q |
1 |
ttggctaatggggatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaata |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| || |||||||| |||||| |||| ||||| || ||||| || ||||||||||||||||| |||| |
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| T |
50273421 |
ttggctaatggcagtggaagacctcctgattggcaggattttgttggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaata |
50273520 |
T |
|
| Q |
101 |
atgccggcaacgctgccgccgctctcatggctggtttagctcccaa |
146 |
Q |
| |
|
|||| || || ||||| || |||||||||||||||||||| ||||| |
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|
| T |
50273521 |
atgctggtaatgctgctgctgctctcatggctggtttagcccccaa |
50273566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 53077834 - 53077748
Alignment:
| Q |
61 |
ttggtcatcaactccaccatcagtttcattgaagaaaataatgccggcaacgctgccgccgctctcatggctggtttagctcccaag |
147 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| | ||||||||| |
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| T |
53077834 |
ttggtgatcaactccaccatcagtttcattgaagaaaataatgccggtaacgctgctgcagctcttatggctggtcttgctcccaag |
53077748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 48439591 - 48439546
Alignment:
| Q |
65 |
tcatcaactccaccatcagtttcattgaagaaaataatgccggcaa |
110 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||| ||||| |
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| T |
48439591 |
tcatcaactcaaccattagtttcattgaagaaaacaatgcaggcaa |
48439546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 15866368 - 15866478
Alignment:
| Q |
21 |
gcctcctgattggcaagactttgttggaatcatt-gctctcttggtcatcaactccaccatcagtttcattgaagaaaataatgccggcaacgctgccgc |
119 |
Q |
| |
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|||||| ||||||||||| ||||| ||||| ||| ||| | ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| || |
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| T |
15866368 |
gcctccagattggcaagattttgtgggaattatttgct-tgttggttatcaactctactatcagtttcattgaagaaaataatgccggtaacgctgctgc |
15866466 |
T |
|
| Q |
120 |
cgctctcatggc |
131 |
Q |
| |
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||||| ||||| |
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| T |
15866467 |
tgctcttatggc |
15866478 |
T |
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