View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2283_high_8 (Length: 250)
Name: NF2283_high_8
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3015183 - 3014936
Alignment:
| Q |
1 |
tctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaa |
100 |
Q |
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| T |
3015183 |
tctttcttgttctcatccttattgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatgatgcattttatcggagataaata |
3015084 |
T |
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| Q |
101 |
ttttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgc |
200 |
Q |
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| T |
3015083 |
ttttgacacccaatttatgtgcaagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgc |
3014984 |
T |
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| Q |
201 |
ac----------tggccttctccacatccttcttatgtataggaccta |
238 |
Q |
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| T |
3014983 |
actggcttgcactggccttctccacatccttcttatgtataggaccta |
3014936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 40671651 - 40671851
Alignment:
| Q |
38 |
taatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttc |
137 |
Q |
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| T |
40671651 |
taatgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaattttgacacccaatttgtgtgcaagttgccaagctcc |
40671750 |
T |
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| Q |
138 |
aggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacct |
237 |
Q |
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| T |
40671751 |
aggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgaacaggacct |
40671850 |
T |
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| Q |
238 |
a |
238 |
Q |
| |
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| T |
40671851 |
a |
40671851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 44607708 - 44607527
Alignment:
| Q |
57 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
156 |
Q |
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||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || | |
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| T |
44607708 |
cttaaattgatcaaatagatgataaataatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatca |
44607609 |
T |
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| Q |
157 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggaccta |
238 |
Q |
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| T |
44607608 |
aacgccaatatagtagaatattctcgtttcttttcaagcattacactggccttcatcacatccttcttatgtacagggccta |
44607527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 44629214 - 44629042
Alignment:
| Q |
57 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
156 |
Q |
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||||||||||||||||||||||| || |||||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || | |
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| T |
44629214 |
cttaaattgatcaaatagatgataaatgatatcggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatca |
44629115 |
T |
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| Q |
157 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgta |
229 |
Q |
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|| |||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44629114 |
aatgccaatatagtagcatattctcgtttcttttcaagcatcacactggccttcatcacatccttcttatgta |
44629042 |
T |
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