View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2283_high_9 (Length: 250)
Name: NF2283_high_9
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_high_9 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1459195 - 1459435
Alignment:
| Q |
10 |
agaagaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcag |
109 |
Q |
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| T |
1459195 |
agaagaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctaaaatgttcaagacaaggtctgacatcag |
1459294 |
T |
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| Q |
110 |
aggaaggagccagcaggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaacccttt |
209 |
Q |
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| T |
1459295 |
aggaaggagccagcaggcttcaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaacccttt |
1459394 |
T |
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| Q |
210 |
gtcatgggttatggaagctgctgctattatggccattgctt |
250 |
Q |
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| T |
1459395 |
gtcatgggttatggaagctgctgctattatggccattgctt |
1459435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 1499515 - 1499308
Alignment:
| Q |
43 |
taggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggac |
142 |
Q |
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| T |
1499515 |
taggaacggattccaatagacgaggtgtttgagcagctaaaatgttcaagacaaggtctgacatcagaagaaggagccaacaggcttcaagtctttggac |
1499416 |
T |
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| Q |
143 |
caaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggc |
242 |
Q |
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| T |
1499415 |
caaacaaattggaagagaaaaaagagagcaagtttttgaagtttttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggc |
1499316 |
T |
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| Q |
243 |
cattgctt |
250 |
Q |
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| T |
1499315 |
cattgctt |
1499308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 26787069 - 26787305
Alignment:
| Q |
14 |
gaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagagga |
113 |
Q |
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| T |
26787069 |
gaaaccttgttgattttgttgtttgttattaggatcgggttccgttggaagaagtgttcgatcatctgaaatgttcgagacaaggtttgacatcggagga |
26787168 |
T |
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| Q |
114 |
aggagccagcaggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtca |
213 |
Q |
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| T |
26787169 |
aggagcgagtaggcttgaagtatttggacataacaaactcgaagagaaaactgagaacaagtttttgaaatttttgggttttatgtggaaccctttatca |
26787268 |
T |
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| Q |
214 |
tgggttatggaagctgctgctattatggccattgctt |
250 |
Q |
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| T |
26787269 |
tgggttatggaagctgctgctattatggccattgctt |
26787305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 975688 - 975620
Alignment:
| Q |
181 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgct |
249 |
Q |
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| T |
975688 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgct |
975620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 50273215 - 50273421
Alignment:
| Q |
44 |
aggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggacc |
143 |
Q |
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| T |
50273215 |
aggaacgaattccagtagaggaagtgttcgagcaactgaaatgttcaagagcaggtttaacctcagacgaaggagccaacaggcttcaagtgtttggtcc |
50273314 |
T |
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| Q |
144 |
aaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggcc |
243 |
Q |
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| T |
50273315 |
aaacaaattggaagagaaaagggaaagcaagtttttgaagttcttaggatttatgtggaatccattatcatgggttatggaagctgctgctattatggcc |
50273414 |
T |
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| Q |
244 |
attgctt |
250 |
Q |
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| T |
50273415 |
attgctt |
50273421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 3151591 - 3151670
Alignment:
| Q |
171 |
caagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctt |
250 |
Q |
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| T |
3151591 |
caagtttttgaagtttttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctt |
3151670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 44529633 - 44529715
Alignment:
| Q |
166 |
gagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgc |
248 |
Q |
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| T |
44529633 |
gagagcaagtttttgaaatttctgggatttatgtggaatcctctttcttgggttatggaggcagctgctataatggctattgc |
44529715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 21983281 - 21983215
Alignment:
| Q |
181 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattg |
247 |
Q |
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| T |
21983281 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattg |
21983215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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