View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2283_low_1 (Length: 799)

Name: NF2283_low_1
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2283_low_1
NF2283_low_1
[»] chr3 (1 HSPs)
chr3 (21-783)||(34894756-34895520)


Alignment Details
Target: chr3 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 21 - 783
Target Start/End: Complemental strand, 34895520 - 34894756
Alignment:
Q  21 gcaaagagtgtagaagaaagaaacttgctcccaaagcacactatccttttctttccttcccttcttcttctctataacctcttcaacagttttaaatttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34895520 gcaaagagtgtagaagaaagaaacttgctcccaaagcacactatccttttctttccttcccttcttcttctctataacctcttcaacagttttaaatttc 34895421  T
Q  121 tacatacaaaaacaaaagcaaagcatcctctcttcacattctctttcttttccttgcaagtttcaatctactattgtaactgtcggtgtannnnnnnngt 220  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  34895420 tacatacaaaaacaaaagcaaagcatcttctcttcacattctctttcttttccttgcaagtttcaatctactattgtaactgtcggtgtattttttttgt 34895321  T
Q  221 taaaaaattcatctaagtttcgtatctttttagttttaatcnnnnnnncatttaatgtagtcagtatgtgtcaagagttcatactttttggtctcctaaa 320  Q
    | |||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34895320 tcaaaaattcatctaagtttcgtatctttttagttttaatcaaaaaaacatttaatgtagtcaatatgtgtcaagagttcatactttttggtctcctaaa 34895221  T
Q  321 tttgagcacttcttgttcctattttgggatgcatgtaaacctcatgatatgagtagtttatcattgaagtgcataaaacagagattttgattaaacccat 420  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34895220 tttgagcacttcttgttcctattttgtgatgcatgtaaacctcatgatatgagtagtttatcattgaagtgcataaaacagagattttgattaaacccat 34895121  T
Q  421 ttcaaagtttatatcttttctttctgggcttgttttgttttgtgtgatcagtaaaataacagaaaaaagcattcattttgttcattctcttgccattttt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34895120 ttcaaagtttatatcttttctttctgggcttgttttgttttgtgtgatcagtaaaataacaga-aaaagcattcattttgttcattctcttgccattttt 34895022  T
Q  521 actgtgaaaaatcagaagaag---nnnnnnnnnnnnnnnnnngtgatttttattcatcatgagttttctaacaggctctcctaaaggctcatgggaaccc 617  Q
    |||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34895021 actgtgaaaaatcagaagaagaaaaaaaaaaaagtaaaaaaagtgatttttattcatcatgagttttctaacaggctctcctaaaggctcatgggaaccc 34894922  T
Q  618 attatgactgttaagacaaatactcagagttattggattaattggagggttttgctttgtgctatttgggttttgctttcaatcattttctcatcattgc 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34894921 attatgactgttaagacaaatactcagagttattggattaattggagggttttgctttgtgctatttgggttttgctttcaatcattttctcatcattgc 34894822  T
Q  718 ttctatggaagtatgaaaaacgttcaagaaatgtttcagctagaaatggtagtggaagagaaaaac 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34894821 ttctatggaagtatgaaaaacgttcaagaaatgtttcagctagaaatggtagtggaagagaaaaac 34894756  T

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