View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2283_low_13 (Length: 245)
Name: NF2283_low_13
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 2131305 - 2131081
Alignment:
| Q |
16 |
caactctatatggtgtcttagtctttttggtatagaccaatagtttgatctgatcaaaagatgtcctgtgaatgttataaaagtatgaagaaaatcacaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2131305 |
caactctatatggtgtcttagtctttttggtatagaccaatagtttgatctgatcaaaagatgtcctgtgaatgttataaaagtatgaagaaaatcacaa |
2131206 |
T |
|
| Q |
116 |
caaagatatgaagtccataaaatttaggagaatcttgtctcaagtcccaattgcaagtcaaaagtgaacatgtcaagtgaaggaggcctaagatgcgcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2131205 |
caaagatatgaagtccataaaatttaggagaatcttgtctcaagtcccaattgcaagtcaaaagtgaacatgtcaagtgaaggaggcctaagatgcgcac |
2131106 |
T |
|
| Q |
216 |
accttgcatgcgagtatagtctgtg |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2131105 |
accttgcatgcgagtatagtctgtg |
2131081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University