View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2283_low_14 (Length: 240)
Name: NF2283_low_14
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 4112782 - 4112953
Alignment:
| Q |
65 |
ctagagagaaattacaaaaatacctttggcttgatttgnnnnnnnnctttctaactggcccactcaatctcttcatttcctctgttagataactaaactt |
164 |
Q |
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| T |
4112782 |
ctagagagaaattacaaaaatacctttggcttgatttgttttt----tttccaactggcccacccaacctcttcactttctctattagataactaaactt |
4112877 |
T |
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| Q |
165 |
ctcattctcctcttactctttcattattttctcattctcttgtttgttgttatcgtttgttgatcgttgataattt |
240 |
Q |
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| T |
4112878 |
ctcattctcttcttactctttcattattttctcattctcttgtttgttgttatcgtttgttgatcgttggtaattt |
4112953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 29753371 - 29753486
Alignment:
| Q |
117 |
aactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctcctcttactctttcattattttctcattctcttgtttgttgtta |
216 |
Q |
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| T |
29753371 |
aactggcccatccaacctcttcacctcctctgttagataactaaatttctcattctcttctcactctttcattattttctcattctcttgtttgttgtta |
29753470 |
T |
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| Q |
217 |
tcgtttgttgatcgtt |
232 |
Q |
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| T |
29753471 |
ttgtttgttgatcgtt |
29753486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 4915740 - 4915802
Alignment:
| Q |
111 |
ctttctaactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctc |
173 |
Q |
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| T |
4915740 |
ctttccaactggttcacccaacctcttcacttcctctgttagataactaaacttctcattctc |
4915802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 49420902 - 49420791
Alignment:
| Q |
117 |
aactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctcctcttactctttc-attattttctcattctcttgtttgttgtt |
215 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||| | |||||||| ||| ||||| || ||| |||||||||| |||||||||||||| |
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| T |
49420902 |
aactggcccacccaacctcttcacttcctctggtagataactaaaatgttcattctcttctcactctctcaattcttttctcattatcttgtttgttgtt |
49420803 |
T |
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| Q |
216 |
atcgtttgttga |
227 |
Q |
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| T |
49420802 |
attgtttgttga |
49420791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 3777231 - 3777182
Alignment:
| Q |
179 |
actctttcattattttctcattctcttgtttgttgttatcgtttgttgat |
228 |
Q |
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| T |
3777231 |
actctttcattattttctcattctcttgtttgttgttattgtttgttgat |
3777182 |
T |
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