View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2283_low_2 (Length: 561)

Name: NF2283_low_2
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2283_low_2
NF2283_low_2
[»] chr1 (1 HSPs)
chr1 (186-276)||(28122099-28122189)
[»] chr2 (6 HSPs)
chr2 (20-104)||(33834311-33834394)
chr2 (199-244)||(27987353-27987398)
chr2 (199-244)||(28073885-28073930)
chr2 (193-228)||(1694625-1694660)
chr2 (20-91)||(2765060-2765130)
chr2 (172-236)||(18705698-18705762)
[»] chr4 (4 HSPs)
chr4 (20-88)||(55774325-55774392)
chr4 (20-88)||(55838534-55838601)
chr4 (186-230)||(45784165-45784209)
chr4 (49-83)||(48095386-48095420)
[»] chr5 (2 HSPs)
chr5 (22-87)||(7037006-7037070)
chr5 (19-88)||(18515343-18515411)
[»] chr3 (2 HSPs)
chr3 (19-104)||(21481576-21481659)
chr3 (175-230)||(36788136-36788191)
[»] chr7 (1 HSPs)
chr7 (193-241)||(26387420-26387468)
[»] chr8 (2 HSPs)
chr8 (20-83)||(41877064-41877126)
chr8 (193-228)||(42319857-42319892)
[»] chr6 (1 HSPs)
chr6 (193-228)||(31661225-31661260)


Alignment Details
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 28122099 - 28122189
Alignment:
Q  186 aataaagttttgatctctataaatatctcaaatttcgtttttagttcctcttaaaattttaagtaagttttgctcaactaaaattttctat 276  Q
    |||||| |||||| || |||||||||||||||||| |||||||  |||||| ||||||||||| |||||||||||  ||||||||||||||    
T  28122099 aataaaattttgacctttataaatatctcaaattttgtttttaactcctctaaaaattttaagcaagttttgctcccctaaaattttctat 28122189  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 33834311 - 33834394
Alignment:
Q  20 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactcaatgaacatttttg 104  Q
    ||||| ||||||||| ||||||||||| ||| |||||||||||||||||||  |||||||||||||||  | |||| ||||||||    
T  33834311 tataaccatattttagattatataatccgaa-cacatccaaactgtgttcgggttatataatccaaaatcccatgatcatttttg 33834394  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 27987398 - 27987353
Alignment:
Q  199 tctctataaatatctcaaatttcgtttttagttcctcttaaaattt 244  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  27987398 tctctataaatatctcaaattttgtttttagtccctctgaaaattt 27987353  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 28073930 - 28073885
Alignment:
Q  199 tctctataaatatctcaaatttcgtttttagttcctcttaaaattt 244  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  28073930 tctctataaatatctcaaattttgtttttagtccctctgaaaattt 28073885  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 1694625 - 1694660
Alignment:
Q  193 ttttgatctctataaatatctcaaatttcgttttta 228  Q
    |||||||||||||||||||||||||||| |||||||    
T  1694625 ttttgatctctataaatatctcaaatttagttttta 1694660  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2765060 - 2765130
Alignment:
Q  20 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactca 91  Q
    |||||||||||||   ||||||||||| ||| |||||||||||| |||||  ||||||||||| ||||||||    
T  2765060 tataagcatatttcggattatataatcagaa-cacatccaaactatgttcagattatataatctaaaactca 2765130  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 18705762 - 18705698
Alignment:
Q  172 aaattttagggttcaataaagttttgatctctataaatatctcaaatttcgtttttagttcctct 236  Q
    ||||||||||||| |||||  ||||  || ||||||| |||||||||||  ||||||||||||||    
T  18705762 aaattttagggttaaataatttttttgtccctataaaaatctcaaatttaatttttagttcctct 18705698  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 55774392 - 55774325
Alignment:
Q  20 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 88  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| | ||||||||||||||||||| ||||    
T  55774392 tataagcatattttagattatataaacc-aaacacatccaaattatgttcgaattatataatccgaaac 55774325  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 55838601 - 55838534
Alignment:
Q  20 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 88  Q
    ||||||||||||||| ||||||||| |  ||||||||||||| | ||||||||||||||||||| ||||    
T  55838601 tataagcatattttagattatataaacc-aaacacatccaaattatgttcgaattatataatccgaaac 55838534  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 45784209 - 45784165
Alignment:
Q  186 aataaagttttgatctctataaatatctcaaatttcgtttttagt 230  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  45784209 aataaggttttgatctctataaatatctcaaattttgtgtttagt 45784165  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 48095386 - 48095420
Alignment:
Q  49 aaacacatccaaactgtgttcgaattatataatcc 83  Q
    |||||||||||||||||||||||||| ||||||||    
T  48095386 aaacacatccaaactgtgttcgaattttataatcc 48095420  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 7037006 - 7037070
Alignment:
Q  22 taagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaa 87  Q
    |||||||| || |||||||||||| | |||| |||||||||| |||||||||||||||||| ||||    
T  7037006 taagcatacttcaaattatataat-tcaaacccatccaaactatgttcgaattatataatctaaaa 7037070  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 18515343 - 18515411
Alignment:
Q  19 gtataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaac 88  Q
    ||||||||| |||| | ||||||||||| ||| |||||||||||| |||||  |||||||||||||||||    
T  18515343 gtataagcacatttcagattatataatccgaa-cacatccaaactctgttcagattatataatccaaaac 18515411  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 21481576 - 21481659
Alignment:
Q  19 gtataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatccaaaactcaatgaacatttttg 104  Q
    |||||||||||||| | |||||||| || ||| |||||||||| |||||||||||| |||||||||||| || | || ||||||||    
T  21481576 gtataagcatatttcagattatatagtccgaa-cacatccaaa-tgtgttcgaattttataatccaaaattctaagatcatttttg 21481659  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 36788191 - 36788136
Alignment:
Q  175 ttttagggttcaataaagttttgatctctataaatatctcaaatttcgtttttagt 230  Q
    |||||||||  |||||| ||||| ||||||||||||| || |||||||||||||||    
T  36788191 ttttagggtaaaataaatttttggtctctataaatatatctaatttcgtttttagt 36788136  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 26387468 - 26387420
Alignment:
Q  193 ttttgatctctataaatatctcaaatttcgtttttagttcctcttaaaa 241  Q
    ||||| |||||| |||||||||||||||| |||||||||||||| ||||    
T  26387468 ttttggtctctaaaaatatctcaaatttcatttttagttcctctgaaaa 26387420  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 41877064 - 41877126
Alignment:
Q  20 tataagcatattttaaattatataatctgaaacacatccaaactgtgttcgaattatataatcc 83  Q
    ||||||||||||| ||||||||||||| | || ||||||||| |||||| | ||||||||||||    
T  41877064 tataagcatatttcaaattatataatccg-aatacatccaaattgtgttgggattatataatcc 41877126  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 42319892 - 42319857
Alignment:
Q  193 ttttgatctctataaatatctcaaatttcgttttta 228  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42319892 ttttgatctctataaatatatcaaatttcgttttta 42319857  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 31661225 - 31661260
Alignment:
Q  193 ttttgatctctataaatatctcaaatttcgttttta 228  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31661225 ttttgatctctataaatatatcaaatttcgttttta 31661260  T

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