View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2283_low_4 (Length: 387)
Name: NF2283_low_4
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 53034419 - 53034064
Alignment:
| Q |
14 |
gaacaaaagcaagaactaatacaggaaatcttgagcatgaaccataaatttaaatccataactaaacaaattaaaaggactataaatattggtcgtccaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53034419 |
gaacaaaagcaagaactaatacaggaaatcttgaacatgaaccataaatttaaatccataactaaacaaattaaaaggactataaatattggtcgtccaa |
53034320 |
T |
|
| Q |
114 |
ttaatctgtgaaacttactcatctatacgggttgtggctaaatactaaaatgtagggtccttgacggtgcattagtataattgtggattaatatagtcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53034319 |
ttaatctgtgaaacttactcatctatacgggttgtggctaaatactaaaatgtagggtccttgacggtgcattagtataattgtggattaatatagtcaa |
53034220 |
T |
|
| Q |
214 |
cgagaaatatctaactttgctgtgttgactaactgttgctccatttcccagcttagctttggagccacaccacagtgttttggaacatattcctgttcaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53034219 |
cgagaaatatctaactttgctgtgttgactaactgttgctccatttcccagcttagctttggagccacaccacagtgttttggaacatattcctgttcaa |
53034120 |
T |
|
| Q |
314 |
agtagaaaatcaacggttgatataattataaataatttgagcataccgtgtgtgtt |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53034119 |
agtagaaaatcagcggttgatataattatcaataatttgagcataccgtgtgtgtt |
53034064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University