View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2283_low_6 (Length: 332)
Name: NF2283_low_6
Description: NF2283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2283_low_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 4566869 - 4567176
Alignment:
| Q |
17 |
acatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatga |
116 |
Q |
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||||||||||| |||||||| ||||| ||| ||||||| | |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4566869 |
acatgattgctcacattcttgttagaacggcatgttattagattagttaccatatatttgagatttatcctcttcatattgattctattttaagtaatga |
4566968 |
T |
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| Q |
117 |
tatgaattaagtttacgttgatnnnnnnnn--tctcaaatatacttgtcgaggataagaaactttaggccctataatcttaa-atataatatgataacat |
213 |
Q |
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| T |
4566969 |
tatgaattaagtttactttcgtaaaaaaaaaatctcaattatacttgtcgaggataagaaactttaggccataggatcttaacatataatatgataacat |
4567068 |
T |
|
| Q |
214 |
aatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgtaggtccattagttacgtcaggtgcatgtgaaactttccagatata |
313 |
Q |
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| T |
4567069 |
aatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgtaggtccattagttacgtcaggtgcatgtgaaactttccagatata |
4567168 |
T |
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| Q |
314 |
aagatgat |
321 |
Q |
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|||||||| |
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| T |
4567169 |
aagatgat |
4567176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 8670257 - 8670144
Alignment:
| Q |
17 |
acatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatga |
116 |
Q |
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| T |
8670257 |
acatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgtattgactctattttaagtaaata |
8670158 |
T |
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| Q |
117 |
tatgaattaagttt |
130 |
Q |
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| T |
8670157 |
tatgaattaagttt |
8670144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 13395 - 13478
Alignment:
| Q |
49 |
tgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagtttac |
132 |
Q |
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| T |
13395 |
tgttcttgggctagtcaccgtgtctttgagatttgtcctccttgtattgactatattttaagtaatgatatgaattaagtttac |
13478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 33582959 - 33583044
Alignment:
| Q |
45 |
ggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
130 |
Q |
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| T |
33582959 |
ggcttgttcttgggctagtcatcgtatatttgagatttgtcctgcttgtattgattctattttaaataatgatatgaattaagttt |
33583044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 49525105 - 49525024
Alignment:
| Q |
49 |
tgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
130 |
Q |
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| T |
49525105 |
tgttcttggactagtcaccatatttttgagatttgtcctccttgtattgactctattttaagtaatgatatgcattaagttt |
49525024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 44655092 - 44655125
Alignment:
| Q |
93 |
tattgattctattttaagtaatgatatgaattaa |
126 |
Q |
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| T |
44655092 |
tattgactctattttaagtaatgatatgaattaa |
44655125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 22573137 - 22573085
Alignment:
| Q |
84 |
tcctcctcatattgattctattttaagtaatgatatgaattaagtttacgttg |
136 |
Q |
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| T |
22573137 |
tcctccttatattgactttattttaaataatgatatgaattaaatttgcgttg |
22573085 |
T |
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