View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2284_high_1 (Length: 486)
Name: NF2284_high_1
Description: NF2284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2284_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 473
Target Start/End: Original strand, 27066688 - 27067146
Alignment:
| Q |
15 |
tcattgttgtttaaggcgtagtttttgaaactgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066688 |
tcattgttgtttaaggcgtagtttttgaaactgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgt |
27066787 |
T |
|
| Q |
115 |
tggagtaattcttgaacgcgtcgattccattgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066788 |
tggagtaattcttgaacgcgtcgattccattgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttc |
27066887 |
T |
|
| Q |
215 |
gtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27066888 |
gtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcagaattccggcagctttgtggag |
27066987 |
T |
|
| Q |
315 |
agtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066988 |
agtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttt |
27067087 |
T |
|
| Q |
415 |
tgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27067088 |
tgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttc |
27067146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 472
Target Start/End: Original strand, 27080633 - 27080829
Alignment:
| Q |
276 |
agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg |
375 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| | || | ||||| |||||||||||||||||||| | |
|
|
| T |
27080633 |
agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg |
27080732 |
T |
|
| Q |
376 |
ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggtt |
472 |
Q |
| |
|
||||| ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
27080733 |
ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttggtt |
27080829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 263 - 468
Target Start/End: Original strand, 27053747 - 27053952
Alignment:
| Q |
263 |
cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg |
362 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| ||| || | || || ||||||||| |
|
|
| T |
27053747 |
cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg |
27053846 |
T |
|
| Q |
363 |
ctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatg |
462 |
Q |
| |
|
|| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| || ||||||||||||| |
|
|
| T |
27053847 |
ctaagtggtgacgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatg |
27053946 |
T |
|
| Q |
463 |
ggtttt |
468 |
Q |
| |
|
||||| |
|
|
| T |
27053947 |
agtttt |
27053952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University