View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2284_high_5 (Length: 409)
Name: NF2284_high_5
Description: NF2284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2284_high_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 409
Target Start/End: Original strand, 4419612 - 4420013
Alignment:
| Q |
5 |
tccaagaatatccacaaaacgacatttagatttgattttctttgcataaannnnnnnaggagcaaatcttgatgggtaaagaaaataaatactttaatga |
104 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4419612 |
tccaataaaatccacaaaacgacatttagatttgattttctttgcataaatttttttaggagcaaatcttgatgggtaaagaaaataaatactttaatga |
4419711 |
T |
|
| Q |
105 |
ggaaacgaaacgtatattttaggtgataaaagagcgagcgtttcttatgaagattgcgctgcatatttgtcaaaactaaatgtgctgggatataattttc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4419712 |
ggaaacgaaacgtatattttaggtgataaaagagtgagcgtttcttatgaagattgcactgcata-ttgtcaaaactaaatgtgctgggatataattttc |
4419810 |
T |
|
| Q |
205 |
acaacgctctaatataaaaagaagnnnnnnnnntcaagagatatatgcaaagccctgtagtataaaataac-gaaaaagccaagggttatacataaaacg |
303 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4419811 |
acaatgctctaatataaaaagaa---aaaaaaatcaagagatatatgcaaagccctgtagtaaaaaataacggaaaaagccaagggttatacataaaacg |
4419907 |
T |
|
| Q |
304 |
caaaatgcatattacttacaatttaaacccaaatcaggataggtgattagagctggtttgtcctggtccccatacacagcaacagagacagaaccatgac |
403 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4419908 |
caaaacgcatattacttacaatttaaacccaaatcaggataggtgattagagctggtttgtcctggtccccatacacagcaacagagacagaaccatgac |
4420007 |
T |
|
| Q |
404 |
atgttc |
409 |
Q |
| |
|
|||||| |
|
|
| T |
4420008 |
atgttc |
4420013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 42764134 - 42764077
Alignment:
| Q |
317 |
acttacaatttaaacccaaatcaggataggtgattagagctggtttgtcctggtcccc |
374 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
42764134 |
acttacaatttagcgctaaatcaggataagtgatcagagctggtttgtcctgatcccc |
42764077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University