View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2284_low_13 (Length: 224)
Name: NF2284_low_13
Description: NF2284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2284_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 18664846 - 18664628
Alignment:
| Q |
1 |
catatatgttttacaacatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtatatgattcagtcaac |
100 |
Q |
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| T |
18664846 |
catatatgttttacaacatttgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaac |
18664747 |
T |
|
| Q |
101 |
gtgttcaggaacatgaacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaag |
200 |
Q |
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| T |
18664746 |
gtgttcaggaacatgaacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaag |
18664647 |
T |
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| Q |
201 |
tgttagaaaagtttcatat |
219 |
Q |
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||||||||||||||||||| |
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| T |
18664646 |
tgttagaaaagtttcatat |
18664628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 18664543 - 18664431
Alignment:
| Q |
4 |
atatgttttacaacatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtatatgattcagtcaacgtg |
103 |
Q |
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| T |
18664543 |
atatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgta |
18664444 |
T |
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| Q |
104 |
ttcaggaacatga |
116 |
Q |
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|||| |||||||| |
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| T |
18664443 |
ttcaagaacatga |
18664431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 18664990 - 18664929
Alignment:
| Q |
157 |
ttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcata |
218 |
Q |
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| T |
18664990 |
ttgcaaggagggtgaagtgaagaaagcaattgctgttttgcaagagttagaaaagcttcata |
18664929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 15078985 - 15079200
Alignment:
| Q |
4 |
atatgttttacaacatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtatatgattcagtcaacgtg |
103 |
Q |
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| T |
15078985 |
atatgttttacaacatttgtcacctctcacagtccgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtg |
15079084 |
T |
|
| Q |
104 |
ttcaggaacatgaacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgt |
203 |
Q |
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| T |
15079085 |
ttcaggaacatgaacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgt |
15079184 |
T |
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| Q |
204 |
tagaaaagtttcatat |
219 |
Q |
| |
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|||||||||||||||| |
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| T |
15079185 |
tagaaaagtttcatat |
15079200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 15079285 - 15079398
Alignment:
| Q |
4 |
atatgttttacaacatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtatatgattcagtcaacgtg |
103 |
Q |
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|||||||||||||||| |||||||||| | ||| ||||||||| | ||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
15079285 |
atatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgta |
15079384 |
T |
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| Q |
104 |
ttcaggaacatgaa |
117 |
Q |
| |
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|||| ||||||||| |
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| T |
15079385 |
ttcaagaacatgaa |
15079398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 15078838 - 15078899
Alignment:
| Q |
157 |
ttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcata |
218 |
Q |
| |
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||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||| |
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| T |
15078838 |
ttgcaaggagggtgaagtgaagaaagcaattgctgttttgcaagagttagaaaagcttcata |
15078899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 7449720 - 7449639
Alignment:
| Q |
138 |
ttgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatat |
219 |
Q |
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|||||||||| ||||||| ||||| ||| ||| |||||||||||||| |||| ||||||| ||| |||||| ||||||| |
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| T |
7449720 |
ttgaggaactagatagtttttgcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatat |
7449639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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