View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2285_high_1 (Length: 353)
Name: NF2285_high_1
Description: NF2285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2285_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 4020818 - 4020499
Alignment:
| Q |
17 |
catagaagtgacttgaacgataaattttagtgttaaaacacatcaacttctaggatttaatttggacaccttagccacttgacccatcaacnnnnnnnnn |
116 |
Q |
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| T |
4020818 |
catagaagtgacttgaacgataaattttagtgttaaaacacatcaacttctaggatttaatttggacaccttagccacttgacccatcaacttttttttt |
4020719 |
T |
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| Q |
117 |
nnngtttcaaagagcatagtggtgaaattcacactcactatacacggagaagagggatttgcgggttagccacttagtgcagattatccctattcaataa |
216 |
Q |
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| T |
4020718 |
---gtttcaaagagcatagtggtgaaattcacactcactaaacacggagaagagggatttgcgggttagccacttagtgcagattatccctattcactaa |
4020622 |
T |
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| Q |
217 |
atccaaccaaataatttagatcctctcaatcaaaccctcttttgatcttctctatctttctctgaatgaagagaggaaaattattagaaaactgaaatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4020621 |
atccaaccaaataatttagatcctctcaatcaaaccctcttttgatcttctctatctttctctgaatgaagagaggaaaattattagaaaactgaaatat |
4020522 |
T |
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| Q |
317 |
aattgtgacattataacattttt |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
4020521 |
aattgtgacattataacattttt |
4020499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 313
Target Start/End: Original strand, 3960666 - 3960787
Alignment:
| Q |
185 |
gccacttagtgcagattatccctattcaataaatccaaccaaataatttagatcctctcaatcaaaccctcttttgatcttctctatctttctctgaatg |
284 |
Q |
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|||||||||| ||||||| |||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||| | |||||||||| |||| |
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| T |
3960666 |
gccacttagttcagattagccctattcgctaaatccaacaaaaga-----gatcctctcaatcaaactctcttttgatcttccccatctttctcttaatg |
3960760 |
T |
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| Q |
285 |
aagagaggaaaattattagaaaactgaaa |
313 |
Q |
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|||||| ||||| ||||||||||||||| |
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| T |
3960761 |
aagaga--aaaatgattagaaaactgaaa |
3960787 |
T |
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