View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_1 (Length: 809)
Name: NF2286_high_1
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 249 - 794
Target Start/End: Complemental strand, 41137480 - 41136935
Alignment:
| Q |
249 |
gatactgtattacggctttaaactgtgcttattacgctgcaagcatttaatattgatgcacaatgcgaaaaaatgtggctgacgcggttgaattgctgtt |
348 |
Q |
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| T |
41137480 |
gatactgtattaaggttttaaactgtgcttattacgctgcaagcatttaatattgatgcataatgcgaaaaaatgtggttgacgcggttgaattgctgct |
41137381 |
T |
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| Q |
349 |
gggataccgttgcagagcctttaaaatcctttatattgcagctgcagaccataatttaaaactatactaattagcttaattggggatccttatttcactg |
448 |
Q |
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| T |
41137380 |
gtgataccgttgcagagactttaaaatcctttatattgcagttgcagaccataatttaaaactatactaattagcttaattggggatccttatttcactg |
41137281 |
T |
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| Q |
449 |
ggtggatatttgaatatattatcatattatgtgacaactaacattggtgtttttataatgaaaggatggaattaatgctgaaccattatttacaattttg |
548 |
Q |
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| T |
41137280 |
ggtggatatttgaatatattatcatattatgtgacaactaacattggtgtttttataatgaaaggatggaattaatgctgaaccattatttacaattttg |
41137181 |
T |
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| Q |
549 |
aatatttaactggctttagtggattttgaaaatgattctttcattccannnnnnnaaaccaaataaataattatatcattcttattatttgatgattgat |
648 |
Q |
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| T |
41137180 |
aatatttaactggctttagtggattttgaaaatgattctttcattccatttttttaaaccaaataaataattatatcattcttattatttgatgattgat |
41137081 |
T |
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| Q |
649 |
ttcagtacaaaggaaagctccatattgaacctcattatgacagtgttccatgtgattttctttggattcatcattgtggctggttattacaatggaagta |
748 |
Q |
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| T |
41137080 |
ttcagtacaaaggaaagctccatattgaacctcattatgacagtgttccatgtgattttctttggattcatcattgtggctggttattacaatggaagta |
41136981 |
T |
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| Q |
749 |
ccaaaaacttggttaatccaaaagggatagctccttatggtgttag |
794 |
Q |
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| T |
41136980 |
ccaaaaacttggtcaatccaaaagggatagctccttatggtgttag |
41136935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 41137728 - 41137538
Alignment:
| Q |
1 |
atactaatggagtatgttttttcaaatgctgctgtagctaggagttttacggaatatttgagttttgcttttggagaaaataatcccaatgtatggagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41137728 |
atactaatggagtatgttttttcaaatgctgctgtagctaggagttttacagaatatttgagttttgcttttggagaaaataatcccaatgtatggagag |
41137629 |
T |
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| Q |
101 |
tagaagttcatggattgccaaaggattataacatgttggattttccagcagtagctctcattcttctcctcactctttgcttgtgtcatag |
191 |
Q |
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| T |
41137628 |
tagaagttcatggattgccaaaggattataacatgttggattttccagcagtagctctcattcttctcctcactctttgcttgtgtcatag |
41137538 |
T |
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