View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_12 (Length: 293)
Name: NF2286_high_12
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 15303934 - 15303696
Alignment:
| Q |
44 |
ctcatcaaattattccactccctttaggttacattatcattgacgtaatcaaacacgccgatttctctgaatgcttatacggtttaggggtacgtatata |
143 |
Q |
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| T |
15303934 |
ctcatcaaattattccactccctttaggttacatgatcattgacatgatcaaacacaccgatttctctgaatgcttatacgatttaggggtacgtatata |
15303835 |
T |
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| Q |
144 |
tatcacttctggttatatgcttcaattgttgcattcttttccttttgaacgaacactgttactgttattttctttgtttttcttgttttagatgtgtgct |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
15303834 |
tatcacttctggttatatgcttcaattgttgcattcttttccttttgaactaa-actaacactgttattttctttgtttttcttgtcttagatgtgtgct |
15303736 |
T |
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| Q |
244 |
aaagaactcataattcctagtgatacccctgatccctatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15303735 |
aaagaactcataattcctagtgatacccctgatccctatg |
15303696 |
T |
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