View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_15 (Length: 262)
Name: NF2286_high_15
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_15 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 13038266 - 13038521
Alignment:
| Q |
7 |
caggcgagagtcgctggccatttatggacgggtatgcatttgcaacttaggtctacattgaatcatttgttgatgcattaagtgcagctacagttgctgc |
106 |
Q |
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| T |
13038266 |
caggcgagagtcgctggccatttatggacgggtatgcatttgcaacttgggtctacattgaatcatttgttgatgcattaagtgcagctacagttgctgc |
13038365 |
T |
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| Q |
107 |
tgcaattgctgcagctgcatcagccaagtcaggtaaagcatctgctgtgtcagctgctgcagcagctagtgcacttgctggtgaaggcacagaacacatg |
206 |
Q |
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| T |
13038366 |
tgcaattgctgcagctgcatcagccaagtcaggtaaagcatctgctgtgtcagctgctgcagcagctagtgcacttgctggtgaaggcacagaacacatg |
13038465 |
T |
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| Q |
207 |
ccacggttattcagttttttatcttctgataatctgggtatagaggcttattttca |
262 |
Q |
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| T |
13038466 |
ccacggttattcagttttttatcttctgataatctgggtatagaggcttattttca |
13038521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 262
Target Start/End: Complemental strand, 28378275 - 28378052
Alignment:
| Q |
39 |
tatgcatttgcaacttaggtctacattgaatcatttgttgatgcattaagtgcagctacagttgctgctgcaattgctgcagctgcatcagccaagtcag |
138 |
Q |
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| T |
28378275 |
tatgcttttgcaacatggatctatattgaatcatttgcagacacattgaatacagctacagttgctgctgcgattgctgcagctgcatccgctaggtctg |
28378176 |
T |
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| Q |
139 |
gtaaagcatctgctgtgtcagctgctgcagcagctagtgcacttgctggtgaaggcacagaacacatgccacggttattcagttttttatcttctgataa |
238 |
Q |
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| T |
28378175 |
gtaaatcatcagccatgtcagctgctgctgcagctagtgcgcttgctggtgaaggtacggtgcacatgccacgactgttcagttttttatctggtgataa |
28378076 |
T |
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| Q |
239 |
tctgggtatagaggcttattttca |
262 |
Q |
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| T |
28378075 |
tcaaggtatagaggcttattttca |
28378052 |
T |
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