View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2286_high_21 (Length: 239)
Name: NF2286_high_21
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2275228 - 2275007
Alignment:
| Q |
1 |
ttctaagccatacacatctaagtggtacctttggttgatgtggccttttacagcttggtccatgttcctcacatgggtctacggccgcacattcattgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275228 |
ttctaagccatacacatctaagtggtacctttggttgatgtggccttttacagcttggtccatgttcctcacatgggtctacggccgcacattcattgtt |
2275129 |
T |
|
| Q |
101 |
gaaagaaaccgttttgatgacaaacttaaccttcaaacttgggcaatacccaagtacagtgttcaggtatctatcaatcatcaatactttcaatttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275128 |
gaaagaaaccgttttgatgacaaacttaaccttcaaacttgggcaatacccaagtacagtgttcaggtatctatcaatcatcaatactttcaatttctat |
2275029 |
T |
|
| Q |
201 |
atattttaattggtaggcaagt |
222 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
2275028 |
ataatttaattggtaggcaagt |
2275007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University