View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_25 (Length: 222)
Name: NF2286_high_25
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_25 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 32139569 - 32139493
Alignment:
| Q |
146 |
tgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacatggcaacatcatgtagtcgtgttagata |
222 |
Q |
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| T |
32139569 |
tgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacaaggcaacatcatgtagtcgtgttagata |
32139493 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32139708 - 32139632
Alignment:
| Q |
1 |
actcatgcctgtactgcataacaacaaagaagtacctcttcagtcttttgaaattgagagagataaaacactgcaat |
77 |
Q |
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| T |
32139708 |
actcatgcctgcactgcataacaacaaagaagtacctcttcagtcttttgaaattgagagagataaaacactgcaat |
32139632 |
T |
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