View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_8 (Length: 313)
Name: NF2286_high_8
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 16102355 - 16102639
Alignment:
| Q |
18 |
ctctttgcaataagaatcacatgatggtgtgtcaagacaaccagcaataaattgtgagcacgtttctgatcctttcactgtcacttgacctgttctccaa |
117 |
Q |
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| T |
16102355 |
ctctttgcaataagaatcacatgatggtgtgtcaagacaaccagcaataaattgtgagcacgtttctgatcctttcactgtcacttgacctgttctccaa |
16102454 |
T |
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| Q |
118 |
atagttaaatcatcacaagataccaaaacaataaaataaaaacatgaaaatttaattcgtaatgttacattgatttgagtgaaactaaattcagatccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16102455 |
atagttaaatcatcacaagataccaaaacaataaaataaaaagatgaaaatttaattcgtaatgttacattgatttgagtgaaactaaattcagatccat |
16102554 |
T |
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| Q |
218 |
taaataaggtctcgaattcaaaccctagatgaaagnnnnnnnnggttgaatagaagaccccacaaaaagatagtcgtccatattc |
302 |
Q |
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| T |
16102555 |
taaataaggtctcgaattcaaaccctagatgaaagaaaaaaaaggttgaatagaagaccccacaaaaagatagtcgtccatattc |
16102639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 16138181 - 16138239
Alignment:
| Q |
19 |
tctttgcaataagaatcacatgatggtgtgtcaagacaaccagcaataaattgtgagca |
77 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
16138181 |
tctttacaataagaatcacatgctggtgtgtcaagacaaccagcaataaatagtgagca |
16138239 |
T |
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