View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_high_9 (Length: 307)
Name: NF2286_high_9
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 11042194 - 11042007
Alignment:
| Q |
94 |
agtctccaatcaacctga-ttaaccctaatcccaccttttttatgggtctaactaaagttccaacataatgaattatgtatctcctttggggtacttgat |
192 |
Q |
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| T |
11042194 |
agtctccaatcaaccttaattaaccctaatccgaccttttttatgggtctaactaaagttccaacataatgaattatgtatctccattggtgtaattcat |
11042095 |
T |
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| Q |
193 |
ctaatcttttattctagtttatttgaattatgaagtctgttttaaatcctttaaataatgaagttgtttggacatgtaaattatccaa |
280 |
Q |
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| T |
11042094 |
ctaatcttttagtctagtttatttgaattatgaagtttgttttaaatcctttaaataatgaagttgtttggacatgtaaattatccaa |
11042007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 11070489 - 11070592
Alignment:
| Q |
170 |
gtatctcctttggggtacttgatctaatcttttattctagtttatttgaattatgaagtctgttttaaatcctt--taaataatgaagttgtttggacat |
267 |
Q |
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| T |
11070489 |
gtatctccattggtgtacttgaactaatcttttagtgaagtttatttgaattatgaagattgttttaaattctttataaataatgaaattctttcgacat |
11070588 |
T |
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| Q |
268 |
gtaa |
271 |
Q |
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|||| |
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| T |
11070589 |
gtaa |
11070592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 11040194 - 11040119
Alignment:
| Q |
162 |
tgaattatgtatctcctttggggtacttgatctaatcttttattctagtttatttgaattatgaagtctgttttaa |
237 |
Q |
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| T |
11040194 |
tgaattatatatctcctttggtgtacttgaactaatcttttaatcaagtttacttgaattctgaagtttgttttaa |
11040119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 11060372 - 11060447
Alignment:
| Q |
162 |
tgaattatgtatctcctttggggtacttgatctaatcttttattctagtttatttgaattatgaagtctgttttaa |
237 |
Q |
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| T |
11060372 |
tgaattatgtatctcctttggtgtacttgaactaatcatttaatcaagtttatttgaattccgaagtttgttttaa |
11060447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 11074241 - 11074317
Alignment:
| Q |
161 |
atgaattatgtatctcctttggggtacttgatctaatcttttattctagtttatttgaattatgaagtctgttttaa |
237 |
Q |
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| T |
11074241 |
atgaattatatatatcctttgtcgtacttgaactaatcttttaatcaagtttacttgaattccgaagtttgttttaa |
11074317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 9711689 - 9711740
Alignment:
| Q |
94 |
agtctccaatcaacctgattaaccctaatccc-accttttttatgggtctaa |
144 |
Q |
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| T |
9711689 |
agtctccaatcaacctgattaaccctaatcccgcccttttttacgggtctaa |
9711740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 19251684 - 19251632
Alignment:
| Q |
94 |
agtctccaatcaa-cctgattaaccctaatcccacctttttt-atgggtctaa |
144 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
19251684 |
agtctccaatcaatcctaattaaccctaatcccaccttttttgatgggtctaa |
19251632 |
T |
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