View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2286_low_10 (Length: 301)

Name: NF2286_low_10
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2286_low_10
NF2286_low_10
[»] chr6 (6 HSPs)
chr6 (1-117)||(5013840-5013956)
chr6 (49-109)||(16693216-16693276)
chr6 (1-109)||(18819436-18819549)
chr6 (1-52)||(16693316-16693367)
chr6 (1-52)||(24904342-24904393)
chr6 (66-109)||(24904412-24904455)
[»] chr8 (4 HSPs)
chr8 (6-117)||(11463648-11463765)
chr8 (49-109)||(28535410-28535470)
chr8 (1-109)||(45483671-45483784)
chr8 (1-52)||(28535508-28535559)
[»] chr1 (6 HSPs)
chr1 (49-117)||(18431441-18431509)
chr1 (49-109)||(22788196-22788256)
chr1 (1-52)||(22788107-22788158)
chr1 (5-52)||(1014404-1014451)
chr1 (5-52)||(18431356-18431403)
chr1 (2-42)||(46546423-46546463)
[»] chr5 (5 HSPs)
chr5 (49-117)||(424571-424639)
chr5 (49-117)||(18113566-18113634)
chr5 (1-108)||(25634154-25634266)
chr5 (1-42)||(17074913-17074954)
chr5 (1-52)||(18113477-18113528)
[»] chr4 (4 HSPs)
chr4 (49-117)||(8903475-8903543)
chr4 (49-117)||(45067540-45067608)
chr4 (1-52)||(45067451-45067502)
chr4 (3-52)||(8903581-8903630)
[»] chr7 (4 HSPs)
chr7 (49-111)||(46437561-46437623)
chr7 (1-52)||(39780576-39780627)
chr7 (1-51)||(46437662-46437712)
chr7 (66-109)||(39780514-39780557)
[»] chr3 (10 HSPs)
chr3 (49-109)||(26555723-26555783)
chr3 (1-52)||(28211393-28211444)
chr3 (1-109)||(26905674-26905787)
chr3 (1-109)||(36615253-36615366)
chr3 (49-109)||(52118542-52118602)
chr3 (1-52)||(25069610-25069661)
chr3 (1-52)||(52118640-52118691)
chr3 (1-52)||(26556968-26557019)
chr3 (66-109)||(25069548-25069591)
chr3 (66-109)||(28211463-28211506)
[»] chr2 (4 HSPs)
chr2 (62-117)||(16916187-16916242)
chr2 (1-52)||(16916088-16916139)
chr2 (9-52)||(4076303-4076346)
chr2 (66-108)||(4076365-4076407)
[»] scaffold0571 (1 HSPs)
scaffold0571 (1-42)||(7-48)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 5013840 - 5013956
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5013840 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgactatttcactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatga 5013939  T
Q  101 gagtggaagaagaagag 117  Q
    |||||||||||||||||    
T  5013940 gagtggaagaagaagag 5013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 16693276 - 16693216
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  16693276 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaag 16693216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18819436 - 18819549
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaag-----gagtgaagatagaaaatgatgttgctgact 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    |||    ||     ||||||||| ||||||| ||||||||||||    
T  18819436 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgaagagagaaaattatgttgctgact 18819535  T
Q  96 gatgagagtggaag 109  Q
    ||||||||||||||    
T  18819536 gatgagagtggaag 18819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16693367 - 16693316
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  16693367 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 16693316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24904342 - 24904393
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  24904342 aaagcaattgtagaatgaatgagaaagtagagaatcaattgaaaatttcact 24904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 24904412 - 24904455
Alignment:
Q  66 gagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||    
T  24904412 gagtgaagagagaaaattatgttgctgattgatgagagtggaag 24904455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 11463648 - 11463765
Alignment:
Q  6 aattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact------agatttgaagaaggagtgaagatagaaaatgatgttgctgactgatg 99  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||      |||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  11463648 aattgtagaatgaatgagaaagtagagaatcaattgactatttcacttacactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctg 11463747  T
Q  100 agagtggaagaagaagag 117  Q
    ||||||||||||| ||||    
T  11463748 agagtggaagaaggagag 11463765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 28535470 - 28535410
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  28535470 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaag 28535410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 45483784 - 45483671
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaag-----gagtgaagatagaaaatgatgttgctgact 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    |||    ||     ||||||||| ||||||| ||||||||||||    
T  45483784 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgaagagagaaaattatgttgctgact 45483685  T
Q  96 gatgagagtggaag 109  Q
    ||||||||||||||    
T  45483684 gatgagagtggaag 45483671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28535559 - 28535508
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  28535559 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 28535508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 18431441 - 18431509
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  18431441 cactagatttgaagaaggagtgaagagagaaaatgatgttgctgactgatgagagtggaagaaggagag 18431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 22788196 - 22788256
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  22788196 cactagaattgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaag 22788256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22788107 - 22788158
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  22788107 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 22788158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 1014451 - 1014404
Alignment:
Q  5 caattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  1014451 caattgtagaatgaatgagaaagtagagaatcaattgactatttcact 1014404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 18431356 - 18431403
Alignment:
Q  5 caattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  18431356 caattgtagaatgaatgagaaagtagagaatcaattgactatttcact 18431403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 46546463 - 46546423
Alignment:
Q  2 aagcaattgtagaatgaatgagaaagtaaagaatcaattga 42  Q
    ||||||||| ||||||||||||||| |||||||||| ||||    
T  46546463 aagcaattggagaatgaatgagaaattaaagaatcagttga 46546423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 424571 - 424639
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||    
T  424571 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagag 424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 18113566 - 18113634
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||    
T  18113566 cactagatttgaagaaggagtgaagagagaaaatgatgttgctgactgctgagaggggaagaaggagag 18113634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25634154 - 25634266
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaag-----gagtgaagatagaaaatgatgttgctgact 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    |||    ||     ||||||||| ||||||| ||||||||||||    
T  25634154 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgaagagagaaaattatgttgctgact 25634253  T
Q  96 gatgagagtggaa 108  Q
    |||||||||||||    
T  25634254 gatgagagtggaa 25634266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17074954 - 17074913
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattga 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  17074954 aaagcaattgtagaatgaatgagaaagtagagaatcaattga 17074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18113477 - 18113528
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    |||||||||||||||||||||| |||||| ||||||||||||  ||||||||    
T  18113477 aaagcaattgtagaatgaatgaaaaagtagagaatcaattgaatatttcact 18113528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8903543 - 8903475
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||    
T  8903543 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagag 8903475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 45067540 - 45067608
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||| ||||    
T  45067540 cactagatttgaaaaaggagtgacgagagaaaatgatgttgctgactgctgagagtggaagaaggagag 45067608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45067451 - 45067502
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  45067451 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 45067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 8903630 - 8903581
Alignment:
Q  3 agcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  8903630 agcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 8903581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 46437623 - 46437561
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaa 111  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  46437623 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgattgatgagagtggaagaa 46437561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39780627 - 39780576
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  39780627 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 39780576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46437712 - 46437662
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcac 51  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  46437712 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcac 46437662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 39780557 - 39780514
Alignment:
Q  66 gagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||    
T  39780557 gagtgaagagagaaaattatgttgttgactgatgagagtggaag 39780514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 26555783 - 26555723
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  26555783 cactagaattgaagaaggagtgaagagagaaaatgatgatgctgactgatgagagtggaag 26555723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28211393 - 28211444
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  28211393 aaagcaattgtagaatgaatgagaaagtagagaatcaattgattatttcact 28211444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26905674 - 26905787
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaag-----gagtgaagatagaaaatgatgttgctgact 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    |||    ||     ||||||||| ||||||| ||||||||||||    
T  26905674 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgaagagagaaaattatgttgctgact 26905773  T
Q  96 gatgagagtggaag 109  Q
    ||||||||||||||    
T  26905774 gatgagagtggaag 26905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 36615366 - 36615253
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcactagatttgaagaag-----gagtgaagatagaaaatgatgttgctgact 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    |||    ||     ||||||||| ||||||| ||||||||||||    
T  36615366 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgaagagagaaaattatgttgctgact 36615267  T
Q  96 gatgagagtggaag 109  Q
    ||||||||||||||    
T  36615266 gatgagagtggaag 36615253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 52118602 - 52118542
Alignment:
Q  49 cactagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||| || |||||||||||    
T  52118602 cactagaattgaagaaggagtgaagagagaaaatgatgctgctgaccgacgagagtggaag 52118542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25069661 - 25069610
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  25069661 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 25069610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 52118691 - 52118640
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  52118691 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 52118640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26557019 - 26556968
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||| ||||||  ||||||||    
T  26557019 aaagcaattgtagaatgaatgagaaagtagagaattaattgactatttcact 26556968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 25069591 - 25069548
Alignment:
Q  66 gagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||    
T  25069591 gagtgaagagagaaaattatgttgttgactgatgagagtggaag 25069548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 28211463 - 28211506
Alignment:
Q  66 gagtgaagatagaaaatgatgttgctgactgatgagagtggaag 109  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  28211463 gagtgaagagagaaaattatgttgctgacttatgagagtggaag 28211506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 16916187 - 16916242
Alignment:
Q  62 gaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 117  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  16916187 gaaggagtgaagagagaaaatgttgttgctgactgatgagagtggaagaaggagag 16916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16916088 - 16916139
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  16916088 aaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcact 16916139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 4076303 - 4076346
Alignment:
Q  9 tgtagaatgaatgagaaagtaaagaatcaattgatcatttcact 52  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||    
T  4076303 tgtagaatgaatgagaaagtagagaatcaattgactatttcact 4076346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 4076365 - 4076407
Alignment:
Q  66 gagtgaagatagaaaatgatgttgctgactgatgagagtggaa 108  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||    
T  4076365 gagtgaagagagaaaattatgttgttgactgatgagagtggaa 4076407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48 - 7
Alignment:
Q  1 aaagcaattgtagaatgaatgagaaagtaaagaatcaattga 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48 aaagcaattgtagaatgaatgagaaagtagagaatcaattga 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University