View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2286_low_11 (Length: 298)

Name: NF2286_low_11
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2286_low_11
NF2286_low_11
[»] chr4 (20 HSPs)
chr4 (1-282)||(21227064-21227345)
chr4 (71-254)||(6625825-6626008)
chr4 (71-282)||(7889651-7889863)
chr4 (71-254)||(6793303-6793486)
chr4 (72-254)||(6716364-6716546)
chr4 (77-254)||(6537038-6537215)
chr4 (79-254)||(6592202-6592377)
chr4 (72-254)||(6833254-6833436)
chr4 (76-254)||(6549362-6549540)
chr4 (113-253)||(6667092-6667232)
chr4 (120-254)||(6749807-6749941)
chr4 (75-249)||(6648012-6648186)
chr4 (72-253)||(6812683-6812859)
chr4 (176-273)||(10034701-10034798)
chr4 (72-238)||(6770394-6770560)
chr4 (72-254)||(6712603-6712782)
chr4 (71-151)||(10034800-10034880)
chr4 (153-238)||(6521756-6521841)
chr4 (6-42)||(21232734-21232770)
chr4 (42-74)||(21232632-21232664)
[»] chr7 (5 HSPs)
chr7 (71-268)||(34719845-34720042)
chr7 (72-241)||(18925424-18925593)
chr7 (72-243)||(34729747-34729918)
chr7 (72-243)||(34734311-34734482)
chr7 (71-243)||(34715082-34715254)
[»] scaffold0552 (1 HSPs)
scaffold0552 (72-253)||(155-331)
[»] scaffold0813 (1 HSPs)
scaffold0813 (72-147)||(2130-2205)
[»] scaffold0373 (1 HSPs)
scaffold0373 (72-159)||(12773-12860)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 21227345 - 21227064
Alignment:
Q  1 acatatcaaataatggagttgtttacaaatatacttttacgaaaatggatcatgaacacctattcgtaaaaatagaaattctagactgtccgattgcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21227345 acatatcaaataatggagttgtttacaaatatacttttacgaaaatggatcatgaacacctattcgtaaaaatagaaattctagactgtccgattgcttg 21227246  T
Q  101 caagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcgaagagaggaattgagatgtgaaatg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21227245 caagagtgagcctgagatctgatctcctcgttctatcccatcgtcgtctttgaaaacataaatcccagcatttcgaagagaggaattgagatgtgaaatg 21227146  T
Q  201 aatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctttatctaaaataaaaaccaaattaccaaag 282  Q
    |||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  21227145 aatttcacatgactttcttcccctctgaaactcaagaacacatcgtgcatctttatctgaaataaaaaccaaattaccaaag 21227064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 254
Target Start/End: Original strand, 6625825 - 6626008
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagca 170  Q
    |||| |||||||||| |||||||||||| |||| |||||   |||||||||||| ||||||| |||  |||||||||||||||||||||||||||| |||    
T  6625825 aataaaaattctagagtgtccgattgctcgcaatagtgaaattgagatctgatcgcctcgttgaatttcatcgtcgtctttgaaaacataaatcccggca 6625924  T
Q  171 tttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    ||| ||||||| |||| ||||||||||||||| ||  || |||||||||||| |||||||||||||||||||| ||||||||||    
T  6625925 ttttgaagagatgaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatcttt 6626008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 282
Target Start/End: Original strand, 7889651 - 7889863
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagca 170  Q
    |||||||||| ||||||||||||  ||||| |  |||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| | |    
T  7889651 aatagaaattttagactgtccgacagcttggattagtgcgactgagatctgatctcctcgttgaatcccatcatcgtctttgaaaacataaagcccggaa 7889750  T
Q  171 tttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctttatct-aaaataaaaac 269  Q
    ||| ||||||||  ||  |||||||||||||||||  |  ||| |||||||| |||||||||||||||||| | |||||||||| ||| |||  ||||||    
T  7889751 ttttgaagagagatatatagatgtgaaatgaattttgctcgacagtcttcccctctgaaactcaagaacacgtcgtacatctttgtctgaaacaaaaaac 7889850  T
Q  270 caaattaccaaag 282  Q
    |||||||||||||    
T  7889851 caaattaccaaag 7889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 6793486 - 6793303
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagca 170  Q
    ||||||||||||||||||||| |||||| |||| ||||||  |||||| ||||||||||||| |||| |||| |||||||||||||||| |||||| |||    
T  6793486 aatagaaattctagactgtccaattgctcgcaacagtgagattgagatatgatctcctcgttgaatctcatcatcgtctttgaaaacatgaatccctgca 6793387  T
Q  171 tttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    ||| |||| ||||||| ||||||||| |  || ||  |  || ||||||||| ||||||||||||||||||||  |||||||||    
T  6793386 ttttgaagggaggaatagagatgtgacacaaactttgcccgattgtcttcccctctgaaactcaagaacacatcatacatcttt 6793303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 6716546 - 6716364
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||||||||| | ||||||| |   |||||| | ||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||     
T  6716546 atagaaattctagactgttcaattgctttccccagtgagaccgagatttgatctcctcgttgaatcccatcgtcgtctttgaaagcataaatccctgcac 6716447  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    |  |||||||||||| ||||||||| |||||  |   | || ||||||||| |||||||||||||||||||| ||||||||||    
T  6716446 tgtgaagagaggaatggagatgtgatatgaaccttggacgattgtcttcccctctgaaactcaagaacacatcgtacatcttt 6716364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 77 - 254
Target Start/End: Original strand, 6537038 - 6537215
Alignment:
Q  77 aattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcga 176  Q
    |||||||||| |||| |||||| |||| |||||   ||||||||||||||||||||| ||| | || |||||||||||||||| |||| | | |||| ||    
T  6537038 aattctagaccgtccaattgctcgcaacagtgatattgagatctgatctcctcgttcgatctcgtcatcgtctttgaaaacatgaatcgcggaattttga 6537137  T
Q  177 agagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    ||||||||||| | |||||||| |||||||||| ||||||| |||| ||| |||||||| |||||||  |||||||||    
T  6537138 agagaggaattcaaatgtgaaacgaatttcacacgactgtcgtcccctctaaaactcaaaaacacatcatacatcttt 6537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 6592202 - 6592377
Alignment:
Q  79 ttctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcgaag 178  Q
    ||||||||||| | |||||| |||| ||||||  |||||| ||||||||||||| |||| | || |||||| |||||||||||||||| |||||| ||||    
T  6592202 ttctagactgttcaattgctcgcaacagtgagattgagatatgatctcctcgttgaatctcgtcatcgtctctgaaaacataaatccccgcattttgaag 6592301  T
Q  179 agaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    |||||||| ||||||||| ||||| ||  |  || ||||||| | ||||||||||||||||||||  |||||||||    
T  6592302 agaggaatagagatgtgacatgaactttgcccgattgtcttctcctctgaaactcaagaacacatcatacatcttt 6592377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 6833436 - 6833254
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    ||||||||||||||||| || |||||| |||| ||||||  |||||||||||||||||||| |||| | |  |||||||||||| ||| ||||||  |||    
T  6833436 atagaaattctagactgcccaattgctcgcaacagtgagattgagatctgatctcctcgttgaatctcgttatcgtctttgaaagcatgaatcccttcat 6833337  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    || |||||||||||  ||||||||| ||||| ||  || |||| ||||||| ||||||||||||||| |||| ||||| ||||    
T  6833336 tttgaagagaggaaaagagatgtgacatgaactttgcacgactatcttcccctctgaaactcaagaatacatcgtacaccttt 6833254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 6549362 - 6549540
Alignment:
Q  76 aaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcg 175  Q
    |||||||||||||||| |||||| | || ||||||  ||| |||||||||||||||| ||||      |||||||||||||||| |||||| ||||||      
T  6549362 aaattctagactgtccaattgctcgaaacagtgagattgatatctgatctcctcgttgaatcttgaaatcgtctttgaaaacatgaatccctgcattttc 6549461  T
Q  176 aagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    |||||||||||  |||||||||||||||||| || |||| ||||||| || |||||||||||| || | ||||||||||    
T  6549462 aagagaggaatgcagatgtgaaatgaatttcgcacgactatcttcccctcggaaactcaagaagacgtcgtacatcttt 6549540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 6667232 - 6667092
Alignment:
Q  113 tgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcgaagagaggaattgagatgtgaaatgaatttcacatga 212  Q
    |||||||||||| ||||||| |||| |||| || ||| |||||  |||||| || |||||| ||||||| |||| ||| ||||| ||||| ||  || ||    
T  6667232 tgagatctgatcacctcgttgaatctcatcatcatctctgaaagtataaatacccgcattttgaagagaagaatagaggtgtgacatgaactttgcacga 6667133  T
Q  213 ctgtcttcccatctgaaactcaagaacacattgtacatctt 253  Q
    || ||||||| ||||||||||||||||||||||||||||||    
T  6667132 ctttcttcccctctgaaactcaagaacacattgtacatctt 6667092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 6749941 - 6749807
Alignment:
Q  120 tgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtctt 219  Q
    ||||||||||||| |||| | || ||||||| ||| |||| |||| | |||||| ||||||| ||||  |||||||||||||||||  || ||||||| |    
T  6749941 tgatctcctcgttgaatctcgtcatcgtcttggaagacatgaatcgctgcattttgaagagaagaatgcagatgtgaaatgaattttgcacgactgtcgt 6749842  T
Q  220 cccatctgaaactcaagaacacattgtacatcttt 254  Q
    | | |||||||||||||||||||| ||||||||||    
T  6749841 ctcctctgaaactcaagaacacatcgtacatcttt 6749807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 6648186 - 6648012
Alignment:
Q  75 gaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcatttc 174  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||| ||||||||||| | ||||  ||| || ||| |||||  || |||||| ||||||     
T  6648186 gaaattctagattgtccgattgctcgcaacagtgagactgagatttgatctcctcgctgaatctgatcatcatctctgaaagtatgaatccctgcatttt 6648087  T
Q  175 gaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtaca 249  Q
    | ||||| |||  || |||||| ||||| ||  || | |||||||||| ||| |||||||||||||||| |||||    
T  6648086 gcagagatgaaaagatatgtgacatgaactttgcacggctgtcttcccctctaaaactcaagaacacatcgtaca 6648012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 6812859 - 6812683
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||||||  ||| ||||||| ||| || ||   |||||| ||||||||||||| |||| || | ||   | ||||| |||||||||| ||||    
T  6812859 atagaaattctagaccatccaattgctttcaacagagat--tgagatatgatctcctcgttgaatctcagcatc---tctgaaagcataaatccccgcat 6812765  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctt 253  Q
    || ||||||||||||  | ||| |||||||||||| || ||||||| |||| ||| |||||||||| ||||| |||||||||    
T  6812764 tttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatctt 6812683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 10034798 - 10034701
Alignment:
Q  176 aagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctttatctaaaataaaaaccaaa 273  Q
    ||||||||||| ||||||||||||||||||| |  || ||||||||| |||||||||||||||||| |  | |||||||  || ||||||||||||||    
T  10034798 aagagaggaatagagatgtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcatgcatctttgcctgaaataaaaaccaaa 10034701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 6770560 - 6770394
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||||||||||| |||||| |||| |||| |  ||| || || |||||||||| || | |||| |||||| | ||| || ||||  | | ||    
T  6770560 atagaaattctagactgtccaattgctcgcaacagtgcgattgatatatgctctcctcgttgaagctcatcatcgtctctaaaagcaaaaatagctgaat 6770461  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaa 238  Q
    || |||||||||||| ||||||||||||||| |||  | || ||||| ||| ||| |||||||||||    
T  6770460 tttgaagagaggaatagagatgtgaaatgaacttcgaacgattgtctacccctctaaaactcaagaa 6770394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 6712782 - 6712603
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    ||||||||||| || ||||  |||||| | || ||||||  |||||| | ||||||| ||| ||||   |||||  || |||||||| ||||||| ||||    
T  6712782 atagaaattcttgagtgtcgaattgctcgtaacagtgagattgagatatcatctccttgttgaatc---tcgtcacctctgaaaacagaaatccctgcat 6712686  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatcttt 254  Q
    || ||||||| ||||  |||||||||| ||||||  ||  || ||| |||| |||||||||||||||||||| ||||| ||||    
T  6712685 tttgaagagaagaatgcagatgtgaaacgaattttgcactaccgtcgtcccctctgaaactcaagaacacatcgtacaccttt 6712603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 10034880 - 10034800
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtcttt 151  Q
    |||||||||||||||||| || |||||||| || | |||| ||||||||| |||||| |||| |||||| || ||||||||    
T  10034880 aatagaaattctagactgaccaattgcttgtaacaatgagactgagatcttatctccacgttgaatcccgtcatcgtcttt 10034800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 6521756 - 6521841
Alignment:
Q  153 aaaacataaatcccagcatttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaa 238  Q
    |||||||||||||| |||||| ||||||| ||||  | ||| ||||||||||| ||| |||| ||||||| |||  ||||||||||    
T  6521756 aaaacataaatccccgcattttgaagagatgaatacaaatgagaaatgaatttaacacgactatcttcccctctagaactcaagaa 6521841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 21232770 - 21232734
Alignment:
Q  6 tcaaataatggagttgtttacaaatatacttttacga 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21232770 tcaaataatggagttgtttacaaatataattttacga 21232734  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 21232664 - 21232632
Alignment:
Q  42 aaaatggatcatgaacacctattcgtaaaaata 74  Q
    ||||||||||| |||||||||||||||||||||    
T  21232664 aaaatggatcaggaacacctattcgtaaaaata 21232632  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 268
Target Start/End: Original strand, 34719845 - 34720042
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagca 170  Q
    |||||||||||||||||| || |||||| |||| |||||| | ||||||||||| ||||| | |||| |||  |||||| | ||||||| ||| | ||||    
T  34719845 aatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagca 34719944  T
Q  171 tttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctttatctaaaataaaaa 268  Q
    ||| ||||||||| || |||||||||||||||| |  || || | ||||||| ||||||||||||||||||||  || ||| ||  ||||||||||||    
T  34719945 ttttgaagagaggtatagagatgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaataaaaa 34720042  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 18925593 - 18925424
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||| ||| | | ||||||| ||| ||||||  |||||||||||||||||||| |||| |||| | |||||||||||||| ||| || ||||    
T  18925593 atagaaattctacactcttcaattgctttcaaaagtgagaatgagatctgatctcctcgttgaatctcatcattgtctttgaaaacatgaataccggcat 18925494  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacac 241  Q
    || ||||||| | || ||||||||||||||||||  || |||  |||  || ||||||||||||||||||    
T  18925493 tttgaagagaagtatagagatgtgaaatgaattttgcacgacaatctatccctctgaaactcaagaacac 18925424  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 34729747 - 34729918
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    ||||||||| |||||||  | ||||||||||| | |||  ||||||||||||| ||||||| |||| |||| || ||| | ||||||||||| |||||||    
T  34729747 atagaaattttagactgctcaattgcttgcaacaatgacgctgagatctgatcacctcgttgaatctcatcatcatctctaaaaacataaattccagcat 34729846  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacat 243  Q
    ||  |||||  | || ||||||||||||||||||  || || |||| | || || |||||||||||| ||||    
T  34729847 tttcaagagctgtatagagatgtgaaatgaattttgcacgagtgtcgttccctcggaaactcaagaagacat 34729918  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 34734311 - 34734482
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||||||||||| || |||||||| | |||  |||||| |||||| ||||||| |||| |||| ||| || | ||||||||||| |||||||    
T  34734311 atagaaattctagactgtcctatggcttgcaacaatgacactgagacctgatcacctcgttgaatctcatcatcgcctctaaaaacataaattccagcat 34734410  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacat 243  Q
    ||  ||| |  | || ||||||||||||||||||  ||||| |||| || |  | |||||||||||| ||||    
T  34734411 tttcaagggccgtatagagatgtgaaatgaattttgcatgagtgtcgtcgccccggaaactcaagaagacat 34734482  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 34715082 - 34715254
Alignment:
Q  71 aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagca 170  Q
    |||| |||||||| ||||||  ||||||| ||| ||  || |||||||||  |||||| ||| |||| |||  |||||| | ||||||||||| ||||||    
T  34715082 aatacaaattctatactgtctaattgcttccaaaaggtagactgagatcttttctcctggttgaatctcattatcgtctctaaaaacataaattccagca 34715181  T
Q  171 tttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacat 243  Q
    ||| ||||||||| || |||||||||| | ||| |  |  || | |||| || ||||||||||||||||||||    
T  34715182 ttttgaagagaggtatagagatgtgaagtcaatctttcgcgagtatctttccctctgaaactcaagaacacat 34715254  T

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Target: scaffold0552 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 331 - 155
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacataaatcccagcat 171  Q
    |||||||||||||||  ||| ||||||| ||| || ||   |||||| ||||||||||||| |||| || | ||   | ||||| |||||||||| ||||    
T  331 atagaaattctagaccatccaattgctttcaacagagat--tgagatatgatctcctcgttgaatctcagcatc---tctgaaagcataaatccccgcat 237  T
Q  172 ttcgaagagaggaattgagatgtgaaatgaatttcacatgactgtcttcccatctgaaactcaagaacacattgtacatctt 253  Q
    || ||||||||||||  | ||| |||||||||||| || ||||||| |||| ||| |||||||||| ||||| |||||||||    
T  236 tttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatctt 155  T

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Target: scaffold0813 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 2130 - 2205
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgt 147  Q
    |||||||||||||||||| | ||||||| |   |||||| | ||||| ||||||||||||| | ||||||||||||    
T  2130 atagaaattctagactgttcaattgctttccccagtgagaccgagatttgatctcctcgttaactcccatcgtcgt 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 12773 - 12860
Alignment:
Q  72 atagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttcaatcccatcgtcgtctttgaaaacat 159  Q
    ||||||||||||||||| || |||| | |  | ||||||  |||||| ||||||||||| | |||| |||| ||||||||||||||||    
T  12773 atagaaattctagactggccaattggtcggcacagtgagattgagatatgatctcctcggtgaatctcatcatcgtctttgaaaacat 12860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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