View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_low_13 (Length: 290)
Name: NF2286_low_13
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_low_13 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 7181 - 7462
Alignment:
| Q |
2 |
tggtcatgcttcggattttcagctctaagtgtgagccgggtgtgttgggaagtttcatgatagaatgtttgaccttatgtaattatgttagtaattatgt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7181 |
tggtcatgcttcggattttcagctctaagtgtgagc-gggtgtgttaggaagtttcatgatagaatgtttgaccttatgtaattatgttagtaattatgt |
7279 |
T |
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| Q |
102 |
tagttattactttgtaattactctccattattttctaattactctcctagatttgactctacctattgtaactatatatactctt-atcattatcaatga |
200 |
Q |
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| T |
7280 |
tggttattactttgtaattactctccattattttgtaattactctcctagatttgactctaacta-------tatatatactcttgatcattatcaatga |
7372 |
T |
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| Q |
201 |
aattcacgaattgatttcctttatggtatcacgagtctaatttcccacgtaacctacccctttcttccttgcaaccgccgccatattctt |
290 |
Q |
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| T |
7373 |
aattcacgaattgatttcctttatggtatcacgagtctaatttcccacgtaacctacccctttcttccttgcaaccgccgccattttctt |
7462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 65 - 283
Target Start/End: Complemental strand, 15935331 - 15935117
Alignment:
| Q |
65 |
aatgtttgaccttatgtaattatgttagtaattatgttagttattactttgtaattactctccattattttctaattactctcctagatttgactctacc |
164 |
Q |
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|||||||||| |||||||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||| |||| ||| |||| ||| ||| |||| |
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| T |
15935331 |
aatgtttgactttatgtaattatgttactaattatgttggttattattttgtaatcactctccattattttgtaat---tctactaggtttaactttacc |
15935235 |
T |
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| Q |
165 |
tattgtaactatatatactctt-atcattatcaatgaaattcacg-aattgatttcctttatggtatcacgagtctaatttcccacgtaacctacccctt |
262 |
Q |
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|| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||| ||||| |||||||| |
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| T |
15935234 |
ta-tgtaactatatatactcttgatcattatcaatgaaagatacgaaattgatttcctatatggtatcccgaatctaatttcc--agtaacatacccctt |
15935138 |
T |
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| Q |
263 |
tcttccttgcaaccgccgcca |
283 |
Q |
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|||||||| || ||||||||| |
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| T |
15935137 |
tcttccttacagccgccgcca |
15935117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 128 - 270
Target Start/End: Original strand, 4701772 - 4701913
Alignment:
| Q |
128 |
attattttctaattactctcctagatttgactctacctattgtaactatatatactctt-atcattatcaatgaaattcac-gaattgatttcctttatg |
225 |
Q |
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|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
4701772 |
attattttgtaattactctcctaggtttgaatctacctattgtaactatatatactcttgatcattatcaatgaaaggcacaaaattgatttcctttatg |
4701871 |
T |
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| Q |
226 |
gtatcacgagtctaatttcccacgtaacctacccctttcttcctt |
270 |
Q |
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| T |
4701872 |
gtatcacgagtttaatt--cca-gtaacctacccctttcttcctt |
4701913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 20619705 - 20619871
Alignment:
| Q |
58 |
atgatagaatgtttgaccttatgtaattatgttagtaattatgttagttattactttgtaattactctccattattttctaattactctcctagatttga |
157 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||| ||| |||||||||||||||||| | ||||||||| ||||| ||||| |
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| T |
20619705 |
atgatagaatgtttgactttatgtaattatgttagtatttacgttggttattattttttaattactctccattattgtgtaattactcacctaggtttga |
20619804 |
T |
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| Q |
158 |
ctctacctattgtaactatatatactcttatcattatcaatgaaattcacg-aattgatttcctttatggtatca |
231 |
Q |
| |
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||| || |||||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
20619805 |
ctcaacatattgtaactat--------taatcattaccaatgaaatgcacgaaattgatttcctttatggtatca |
20619871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 24638274 - 24638207
Alignment:
| Q |
59 |
tgatagaatgtttgaccttatgtaattatgttagtaattatgttagttattactttgtaattactctc |
126 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||| || |||| ||||||||||||||| |
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| T |
24638274 |
tgatagaatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc |
24638207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 24647203 - 24647136
Alignment:
| Q |
59 |
tgatagaatgtttgaccttatgtaattatgttagtaattatgttagttattactttgtaattactctc |
126 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| || |||| ||||||||||||||| |
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| T |
24647203 |
tgatagaatgtttgactttatgtaattatgttagtagctatgttggtaattattttgtaattactctc |
24647136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 20620751 - 20620795
Alignment:
| Q |
58 |
atgatagaatgtttgaccttatgtaattatgttagtaattatgtt |
102 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20620751 |
atgatagaatgtttgactttatgtaattatgttagtaattatgtt |
20620795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 21875323 - 21875273
Alignment:
| Q |
92 |
gtaattatgttagttattactttgtaattactctccattattttctaatta |
142 |
Q |
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||||||||||| || |||| ||||||||||||||| |||||||| |||||| |
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| T |
21875323 |
gtaattatgttcgtaattattttgtaattactctctattattttgtaatta |
21875273 |
T |
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