View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_low_2 (Length: 411)
Name: NF2286_low_2
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 54657657 - 54657276
Alignment:
| Q |
14 |
gataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcg |
113 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657657 |
gataagtgcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattggtcg |
54657558 |
T |
|
| Q |
114 |
tgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctcca |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657557 |
tgtcaacattgcatttgatgtggccggcctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctcca |
54657458 |
T |
|
| Q |
214 |
ttcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657457 |
ttcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaaaga |
54657358 |
T |
|
| Q |
314 |
attatggcagcaagagatcggtcttgatcttgctcctgcgataaaaaccaattttatgtgaatgtatctaaacataaattta |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657357 |
attatggcagcaagagatcggtcttgatcttgctcctgtgataaaaaccaattttatgtgaatgtatctaaacataaattta |
54657276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 43733718 - 43733389
Alignment:
| Q |
7 |
agatgacgataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaa |
106 |
Q |
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|||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||| |||| |
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| T |
43733718 |
agatgaagataagttcaagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattgaaa |
43733619 |
T |
|
| Q |
107 |
ttggtcgtgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgc |
206 |
Q |
| |
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||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
43733618 |
ttgaccgtgtcaacattgcatttgatatggtcgggctgcggcttggtccacgtcaattgatgatcttgggggcttgcatgatacttagctcgttacatgc |
43733519 |
T |
|
| Q |
207 |
agctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaact |
306 |
Q |
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||||||||||||| ||||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43733518 |
agctccattcgtggagcacatcataagcatgagagacattaaagatgggtgaagtgtttgtagcctcccaaagcttggtataacgactcttccacaaact |
43733419 |
T |
|
| Q |
307 |
ccaaagaattatggcagcaagagatcggtc |
336 |
Q |
| |
|
||||||||| |||||||| |||| |||||| |
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| T |
43733418 |
ccaaagaatcatggcagccagaggtcggtc |
43733389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 28570534 - 28570860
Alignment:
| Q |
7 |
agatgacgataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaa |
106 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
28570534 |
agatgaagataagtgcaagtagtcag-tttacctaa-aatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattgaaa |
28570631 |
T |
|
| Q |
107 |
ttggtcgtgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgc |
206 |
Q |
| |
|
|||| | |||||||||||||||||||||| |||| || |||||||||||| || ||||||||||| ||| |||||| | ||||||||||||||||| |
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|
| T |
28570632 |
ttggatgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacatcgattgctgatcttaggg-cttgcccg---cttagctcgttgcatgc |
28570727 |
T |
|
| Q |
207 |
agctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaact |
306 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| ||| || |||||||| |||||||||||||||||||||||| ||||||| | | ||| |
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|
| T |
28570728 |
agctccattcgtgtagcacatcatgagcataagagacaatgaaggtgggtcaagtgtttctagcctcccaaagcttggtattacgactcttctagagact |
28570827 |
T |
|
| Q |
307 |
ccaaagaattatggcagcaagagatcggtcttg |
339 |
Q |
| |
|
||||||||| |||| ||| |||| ||||||||| |
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| T |
28570828 |
ccaaagaatcatggtagccagaggtcggtcttg |
28570860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 29928835 - 29928997
Alignment:
| Q |
162 |
gttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagt |
261 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||| |||| ||||||||||| ||| ||||||| |
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| T |
29928835 |
gttgttgatcttgggggcttgtcagatgtttagcttgttgcatgcaaatccattcatgtaacacatcatgagcatgagagacaatgaaggtgggtgaagt |
29928934 |
T |
|
| Q |
262 |
gtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcagc |
324 |
Q |
| |
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|| |||| | ||||||||| || |||| || |||||| ||||| |||||||| |||||||| |
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| T |
29928935 |
gtcactagctttccaaagcttcgtgttacgacacttccataaacttcaaagaatcatggcagc |
29928997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 29928714 - 29928810
Alignment:
| Q |
14 |
gataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
29928714 |
gataagtgcaagtagtcacatttatcaaataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaattgg |
29928810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 42703168 - 42703227
Alignment:
| Q |
171 |
cttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcat |
230 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||| | |||||||||| ||||||||||| |
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|
| T |
42703168 |
cttgggggcacgccggatgtttagctctttgcatgaaactccattcgtatagcacatcat |
42703227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 34763013 - 34763053
Alignment:
| Q |
59 |
gagtctctaaagcataaaccataagccataatagagttatt |
99 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||| |
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| T |
34763013 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 34763834 - 34763794
Alignment:
| Q |
59 |
gagtctctaaagcataaaccataagccataatagagttatt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
34763834 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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