View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2286_low_23 (Length: 238)

Name: NF2286_low_23
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2286_low_23
NF2286_low_23
[»] chr5 (11 HSPs)
chr5 (19-238)||(24837965-24838184)
chr5 (31-229)||(26014028-26014226)
chr5 (84-210)||(26335231-26335357)
chr5 (152-231)||(24492066-24492145)
chr5 (37-210)||(20690348-20690518)
chr5 (150-238)||(16182670-16182758)
chr5 (147-210)||(24884889-24884951)
chr5 (153-210)||(9089314-9089374)
chr5 (152-210)||(2152615-2152675)
chr5 (149-210)||(25570138-25570198)
chr5 (178-226)||(9824691-9824738)
[»] chr4 (24 HSPs)
chr4 (38-238)||(11419991-11420191)
chr4 (31-238)||(11449081-11449288)
chr4 (32-238)||(17473728-17473935)
chr4 (32-238)||(20896761-20896965)
chr4 (32-210)||(11545467-11545645)
chr4 (50-231)||(21809615-21809794)
chr4 (49-238)||(47575913-47576103)
chr4 (111-238)||(8677203-8677330)
chr4 (57-238)||(19053498-19053680)
chr4 (99-191)||(12380501-12380593)
chr4 (37-137)||(21821855-21821955)
chr4 (97-230)||(20245687-20245820)
chr4 (152-229)||(22222325-22222402)
chr4 (145-210)||(23088018-23088084)
chr4 (146-210)||(25650791-25650859)
chr4 (150-227)||(22316346-22316422)
chr4 (129-210)||(12417259-12417342)
chr4 (145-210)||(2652131-2652197)
chr4 (176-226)||(8912085-8912135)
chr4 (145-210)||(10250221-10250289)
chr4 (153-210)||(4745944-4746001)
chr4 (165-210)||(8502758-8502803)
chr4 (149-210)||(11700985-11701046)
chr4 (175-223)||(12333733-12333781)
[»] chr3 (33 HSPs)
chr3 (77-238)||(14426877-14427038)
chr3 (40-230)||(38076005-38076195)
chr3 (37-210)||(9796435-9796608)
chr3 (32-231)||(17119286-17119486)
chr3 (32-208)||(4514934-4515111)
chr3 (31-238)||(4767328-4767535)
chr3 (95-238)||(13291331-13291473)
chr3 (36-210)||(17034140-17034313)
chr3 (108-230)||(20311342-20311464)
chr3 (49-230)||(17637148-17637329)
chr3 (32-113)||(5554685-5554766)
chr3 (19-210)||(14332528-14332721)
chr3 (173-237)||(5554623-5554687)
chr3 (95-210)||(4244324-4244439)
chr3 (125-210)||(4253249-4253335)
chr3 (32-141)||(14252248-14252358)
chr3 (147-229)||(46349400-46349482)
chr3 (37-229)||(16198648-16198839)
chr3 (150-238)||(30212510-30212598)
chr3 (131-210)||(19705754-19705834)
chr3 (147-210)||(11044998-11045061)
chr3 (150-230)||(5797907-5797988)
chr3 (112-210)||(14328645-14328743)
chr3 (162-210)||(5638328-5638376)
chr3 (59-141)||(19306694-19306777)
chr3 (155-210)||(23953633-23953688)
chr3 (145-210)||(6713464-6713532)
chr3 (176-226)||(13340407-13340457)
chr3 (145-210)||(14073089-14073157)
chr3 (37-119)||(27405714-27405795)
chr3 (150-210)||(13932299-13932360)
chr3 (145-210)||(10852163-10852230)
chr3 (153-210)||(22141147-22141208)
[»] chr8 (22 HSPs)
chr8 (32-238)||(24308523-24308729)
chr8 (49-238)||(23584556-23584744)
chr8 (57-230)||(28890577-28890750)
chr8 (49-238)||(25724290-25724479)
chr8 (102-210)||(12863736-12863844)
chr8 (78-230)||(18527761-18527913)
chr8 (95-210)||(24276858-24276973)
chr8 (95-210)||(7321033-7321148)
chr8 (49-142)||(25727266-25727359)
chr8 (150-229)||(13303526-13303605)
chr8 (150-229)||(24502364-24502443)
chr8 (150-226)||(13645687-13645762)
chr8 (150-226)||(13746112-13746187)
chr8 (145-210)||(18789623-18789688)
chr8 (86-182)||(24122100-24122196)
chr8 (150-238)||(27118265-27118353)
chr8 (148-210)||(17937683-17937746)
chr8 (145-210)||(23192298-23192364)
chr8 (145-210)||(23352781-23352849)
chr8 (150-210)||(17689721-17689782)
chr8 (150-210)||(13281591-13281651)
chr8 (150-210)||(18566198-18566257)
[»] chr7 (31 HSPs)
chr7 (38-238)||(19143836-19144036)
chr7 (38-238)||(20743235-20743435)
chr7 (38-204)||(10646486-10646652)
chr7 (37-238)||(8105919-8106120)
chr7 (37-238)||(27706947-27707148)
chr7 (49-230)||(17891034-17891215)
chr7 (50-231)||(32957869-32958050)
chr7 (38-210)||(24865670-24865841)
chr7 (36-210)||(956829-957002)
chr7 (38-210)||(1783268-1783439)
chr7 (123-210)||(4031203-4031290)
chr7 (152-238)||(26822674-26822761)
chr7 (95-177)||(5265588-5265670)
chr7 (153-230)||(12341682-12341759)
chr7 (147-238)||(7185252-7185342)
chr7 (150-238)||(1775243-1775331)
chr7 (49-139)||(23022373-23022462)
chr7 (145-210)||(10924636-10924701)
chr7 (32-133)||(15053396-15053496)
chr7 (178-223)||(19142385-19142430)
chr7 (178-223)||(20741784-20741829)
chr7 (163-210)||(7560725-7560772)
chr7 (130-210)||(18361339-18361421)
chr7 (145-210)||(9065834-9065900)
chr7 (145-210)||(15304943-15305009)
chr7 (36-140)||(8259626-8259730)
chr7 (130-210)||(9396619-9396700)
chr7 (130-210)||(9763026-9763107)
chr7 (153-210)||(8183349-8183410)
chr7 (50-90)||(16033448-16033488)
chr7 (150-210)||(20053619-20053678)
[»] chr2 (34 HSPs)
chr2 (37-229)||(27765297-27765489)
chr2 (59-226)||(16586579-16586746)
chr2 (32-238)||(18848618-18848824)
chr2 (36-209)||(23959636-23959808)
chr2 (37-210)||(35665811-35665984)
chr2 (37-229)||(22311200-22311393)
chr2 (122-208)||(13074082-13074168)
chr2 (36-210)||(22268948-22269120)
chr2 (32-138)||(28449231-28449337)
chr2 (145-228)||(20586942-20587025)
chr2 (57-121)||(19564982-19565046)
chr2 (49-140)||(20588519-20588610)
chr2 (152-231)||(21547886-21547965)
chr2 (163-210)||(42256589-42256636)
chr2 (103-185)||(17569241-17569323)
chr2 (95-210)||(15375926-15376042)
chr2 (37-119)||(21748222-21748305)
chr2 (150-225)||(24764124-24764199)
chr2 (145-230)||(18038706-18038792)
chr2 (173-231)||(21585049-21585107)
chr2 (147-229)||(25916196-25916278)
chr2 (57-132)||(13073936-13074010)
chr2 (49-119)||(21547998-21548069)
chr2 (37-107)||(17417199-17417269)
chr2 (108-230)||(19877711-19877833)
chr2 (37-121)||(21578363-21578449)
chr2 (176-226)||(26654329-26654379)
chr2 (177-230)||(17417077-17417130)
chr2 (150-210)||(24302587-24302650)
chr2 (150-210)||(25189749-25189812)
chr2 (150-210)||(25348471-25348530)
chr2 (152-236)||(29410053-29410137)
chr2 (145-208)||(33241008-33241072)
chr2 (145-208)||(33248929-33248993)
[»] chr1 (28 HSPs)
chr1 (37-238)||(33439190-33439392)
chr1 (86-210)||(14580346-14580470)
chr1 (98-238)||(12398089-12398229)
chr1 (37-230)||(31584009-31584201)
chr1 (57-230)||(17103028-17103200)
chr1 (49-142)||(30805595-30805687)
chr1 (102-211)||(2973420-2973529)
chr1 (32-153)||(17316124-17316244)
chr1 (85-238)||(1812428-1812582)
chr1 (37-210)||(41029581-41029752)
chr1 (150-230)||(15787402-15787482)
chr1 (129-210)||(10751508-10751592)
chr1 (37-170)||(15440920-15441051)
chr1 (152-238)||(15650720-15650806)
chr1 (77-210)||(34188104-34188237)
chr1 (165-238)||(22666687-22666760)
chr1 (95-204)||(26898360-26898469)
chr1 (49-118)||(37283053-37283122)
chr1 (174-210)||(30498306-30498342)
chr1 (153-229)||(37282943-37283019)
chr1 (145-209)||(1090159-1090225)
chr1 (147-238)||(19018745-19018836)
chr1 (152-210)||(35896470-35896529)
chr1 (152-238)||(12668682-12668768)
chr1 (156-238)||(17496286-17496368)
chr1 (150-210)||(2818977-2819038)
chr1 (37-82)||(22049591-22049636)
chr1 (86-203)||(43282136-43282252)
[»] chr6 (24 HSPs)
chr6 (65-238)||(10814388-10814563)
chr6 (36-208)||(22562386-22562559)
chr6 (32-238)||(4312650-4312856)
chr6 (95-210)||(29032325-29032440)
chr6 (103-238)||(11703736-11703872)
chr6 (96-208)||(21747375-21747487)
chr6 (95-210)||(26238936-26239051)
chr6 (50-211)||(17146200-17146360)
chr6 (49-210)||(17291798-17291959)
chr6 (150-231)||(10821477-10821558)
chr6 (130-210)||(12394827-12394908)
chr6 (132-227)||(24576133-24576230)
chr6 (165-210)||(30701121-30701166)
chr6 (86-210)||(6560522-6560646)
chr6 (150-210)||(27124700-27124759)
chr6 (150-229)||(18614922-18615000)
chr6 (176-226)||(10482486-10482536)
chr6 (190-228)||(14272294-14272332)
chr6 (145-210)||(14315250-14315316)
chr6 (147-210)||(16877613-16877680)
chr6 (176-226)||(19134132-19134182)
chr6 (130-210)||(31127068-31127149)
chr6 (150-210)||(15477523-15477583)
chr6 (145-210)||(24718444-24718511)
[»] scaffold0804 (1 HSPs)
scaffold0804 (86-210)||(63-187)
[»] scaffold0003 (1 HSPs)
scaffold0003 (36-210)||(319069-319241)
[»] scaffold0161 (1 HSPs)
scaffold0161 (150-238)||(5467-5554)
[»] scaffold0650 (1 HSPs)
scaffold0650 (32-110)||(6194-6272)
[»] scaffold0329 (1 HSPs)
scaffold0329 (145-230)||(4674-4759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (150-231)||(28300-28381)
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-119)||(105355-105438)
[»] scaffold0758 (1 HSPs)
scaffold0758 (130-210)||(4626-4707)
[»] scaffold0754 (1 HSPs)
scaffold0754 (191-229)||(4950-4988)
[»] scaffold0074 (1 HSPs)
scaffold0074 (150-210)||(32017-32078)
[»] scaffold0002 (1 HSPs)
scaffold0002 (150-210)||(112582-112643)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24838184 - 24837965
Alignment:
Q  19 atttcttcttaataaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgt 118  Q
    |||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  24838184 atttcttcttaacaaggagttgacttctgcttgacctttcttcatatcttctaccatagtctttgagcttctctcatgtttttgatgctcttatacatgt 24838085  T
Q  119 ttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagag 218  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  24838084 tcagaccttgttaaattttaatcttcgatcatgcacacttgatcatatattaacatatccaattgatgtttaatactttgttatcatcaaaaacttagag 24837985  T
Q  219 gaattgtacaaactaatttt 238  Q
    ||| ||||||||||||||||    
T  24837984 gaaatgtacaaactaatttt 24837965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 26014028 - 26014226
Alignment:
Q  31 taaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtt 130  Q
    ||||| |||||||| || ||||| | |||||||||| |||| |||| |||||||| |||||| |||| | ||||||||||||||||||| | ||||||||    
T  26014028 taaggtgttgacttttggttgacatttcttcagatcatctatcatagtctttgagattctcttatgcatatgatgctcttatacatgttcataccttgtt 26014127  T
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    | |||| |||||  |||| ||  | ||||| |||||||||||||||| ||||||| ||||||| ||||||||| |||||| | |||| |||||||||||    
T  26014128 atatttaaatctatggtcttgtgctcttgaacatatattaacatatctaattgttctttaatattttgttatcgtcaaaaccttagaagaattgtacaa 26014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 26335357 - 26335231
Alignment:
Q  84 agcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg 183  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||||| ||||| |||||  |||| | || | |||| |||||||||  |||||||||||    
T  26335357 agcttctcttatgcttctgatgctcatatacatgttaagatcttgttgaatttcaatctatggtccttcatatttgaacatatattagtatatccaattg 26335258  T
Q  184 ttgtttaatactttgttatcatcaaaa 210  Q
    || ||||||| ||||||||||||||||    
T  26335257 ttctttaataatttgttatcatcaaaa 26335231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 24492145 - 24492066
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||| || ||||||  ||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||    
T  24492145 cacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaaac 24492066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 20690348 - 20690518
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    ||||||||||| ||||||| |||||| ||||| ||  | | ||||| ||||||||| |||||||| ||||||||||| ||||| ||| || | |||||||    
T  20690348 gttgacttatgattgacctttcttcaaatcttttataa-agtcttt-agcttctcttatgcttctaatgctcttatatatgttcagaact-gataaattt 20690444  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||   ||  |||| |||| |  || ||||| |||||||||||||| ||||||| |||||| |||||||||    
T  20690445 taatctatagtattgcatacttaaatatgtattagcatatccaattgttttttaatattttgttctcatcaaaa 20690518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 16182670 - 16182758
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||||   ||||| |||| ||||||| ||||||    
T  16182670 tgcacactttaacatatattagcacatccaattattctttaatactttgttatcatcaaaactctagagaaattatacaaaccaatttt 16182758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 24884951 - 24884889
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||| ||||| |||  ||||| |||| || ||||||||||||||||||||||||    
T  24884951 tcatgcacacttgaacatatgttagtatatc-aattattctttaatactttgttatcatcaaaa 24884889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 9089314 - 9089374
Alignment:
Q  153 acacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| || |||||| ||||||||||||   || ||||||||||||||||||||||||    
T  9089314 acacttgaacaaatattagcatatccaattgaaattttttaatactttgttatcatcaaaa 9089374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 2152675 - 2152615
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgt--tgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| || |||||| ||||||||||| |  | ||||||||||||||||||||||||    
T  2152675 cacacttgaacaaatattagcatatccaattatcatttttaatactttgttatcatcaaaa 2152615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 25570138 - 25570198
Alignment:
Q  149 atgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||| ||||| |||  | ||||||||||| || |||||||||||||||||||||    
T  25570138 atgcacacttgaacatatgttagta-atccaattgttcttcaatactttgttatcatcaaaa 25570198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 9824691 - 9824738
Alignment:
Q  178 caattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||| || ||||||||||||||||| ||||| |||||||||||||    
T  9824691 caattgttcttcaatactttgttatcatc-aaaacctagaggaattgta 9824738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 11419991 - 11420191
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    ||||||| || ||||||| |||||||||||||||||||| |||||||||||||||  | ||||||||| ||||||||||||| |||||||||||||||||    
T  11419991 ttgacttctggttgacctttcttcagatcttctaccatagtctttgagcttctcttctacttctgatgttcttatacatgttcagaccttgttaaatttt 11420090  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaattt 237  Q
    ||| |  |||| |  |||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||| ||||||    
T  11420091 aatatatggtcctttacacttgaacatatattatcatatccaattgttctttaatattttgttatcatcaaaaccttagaggaattgtacaaattaattt 11420190  T
Q  238 t 238  Q
    |    
T  11420191 t 11420191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 11449288 - 11449081
Alignment:
Q  31 taaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtt 130  Q
    ||||| |||||||| || || |||| |||| ||||||||||||||| ||| | ||||||||| |||||| |||||||||| |||||||| ||||||| ||    
T  11449288 taaggtgttgacttctgattaacctttcttgagatcttctaccatagtctattagcttctcttatgcttttgatgctcttttacatgttcagaccttatt 11449189  T
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    |||||||||| |  |||| ||||||||||| ||||||||||||| |||||||||| || |||| | ||||||||||||||   || || |||||||||||    
T  11449188 aaattttaatatatggtcctgcacacttgaacatatattaacatgtccaattgttcttcaatattgtgttatcatcaaaactctaaagaaattgtacaaa 11449089  T
Q  231 ctaatttt 238  Q
    | ||||||    
T  11449088 ccaatttt 11449081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 17473935 - 17473728
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || ||||||| |||||| ||||||||||||| |||||||| ||||||  |||||||||| |||||||||||||| |||||||||||    
T  17473935 aaggtgttgacttttggttgacctttcttcaaatcttctaccatagtctttgagtttctcttgtgcttctgatactcttatacatgttcagaccttgtta 17473836  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac-tttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    ||||||||| |  | || ||||||||||| |||||||||||||||  |||| || |||||||| ||| ||||||||||||   |||| || |||||||||    
T  17473835 aattttaatttatgttcctgcacacttgaacatatattaacatatttaatttttctttaatacttttattatcatcaaaactttagaagatttgtacaaa 17473736  T
Q  231 ctaatttt 238  Q
    | ||||||    
T  17473735 ccaatttt 17473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 20896965 - 20896761
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || || | || |||| ||||||||||||||| ||||||||||||| |  ||| |  |||||||||||||||||| |||||||||||    
T  20896965 aaggtgttgacttctggttaaactttctttagatcttctaccatagtctttgagcttctattgtgcattcgatgctcttatacatgttaagaccttgtta 20896866  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    || |||||| |  ||||||||| |||  | ||||||||| |||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||    
T  20896865 aaatttaatatatggtcatgcatact--aacatatattagcatatccaattgttctttaatactttattatcatcaaaatcttagaggaattgtacaaac 20896768  T
Q  232 taatttt 238  Q
     ||||||    
T  20896767 caatttt 20896761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 11545467 - 11545645
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || || |||| |||| ||||||||||||||| ||| | ||||||||| || ||| |||||||||| |||||||| ||||||| |||    
T  11545467 aaggtgttgacttctgattaacctttcttgagatcttctaccatagtctattagcttctcttatacttttgatgctcttttacatgttcagaccttatta 11545566  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |  |||| ||||||||||| ||||||||||||| |||||||||| || |||| | ||||||||||||||    
T  11545567 aattttaatatatggtcctgcacacttgaacatatattaacatgtccaattgtttttcaatattgtgttatcatcaaaa 11545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 21809794 - 21809615
Alignment:
Q  50 tgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtca 149  Q
    |||||| ||||||||| |||||||||| ||||||||||||| |  |||||| ||||||||||  |||||| |||||||||||| |||||||     |||     
T  21809794 tgacctttcttcagattttctaccatagtctttgagcttcttttgtgcttcagatgctctta--catgttcagaccttgttaagttttaattaattgtct 21809697  T
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    | ||||||| | ||||||||| |||||||||||||| ||||||| |||||||||||||||| | || |||||||||||||||    
T  21809696 tacacacttaaacatatattagcatatccaattgttttttaatattttgttatcatcaaaatcttataggaattgtacaaac 21809615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 47575913 - 47576103
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggt 147  Q
    ||||||| |||||||||||||||||||  ||||| || ||||||   ||||| ||||||||||||||||||| |||| ||||||||||||||| |    |    
T  47575913 ttgacctttcttcagatcttctaccatggtcttttagtttctctttgtgcttttgatgctcttatacatgttcagactttgttaaattttaatttataat 47576012  T
Q  148 catgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    | |  |||||||| ||||||||| ||||| ||| |||| |||||||||||||||||||||||| | |||||||||| ||||||| ||||||    
T  47576013 cctatacacttgaacatatattagcatattcaagtgttctttaatactttgttatcatcaaaatcctagaggaattatacaaaccaatttt 47576103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 8677330 - 8677203
Alignment:
Q  111 atacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| || ||||||||||||||||| |  | || ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  8677330 atacatgttcagtccttgttaaattttaatatgtgatcttgcacacttgaacatatattaacatattcaattgttttttaatactttgttatcatcaaaa 8677231  T
Q  211 acatagaggaattgtacaaactaatttt 238  Q
       |||||||||||||||||| ||||||    
T  8677230 ctctagaggaattgtacaaaccaatttt 8677203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 19053498 - 19053680
Alignment:
Q  57 tcttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcaca 155  Q
    |||| ||||||||||| ||| ||||| |||||||||   ||||||||||||||||||| || || |||||||||||||||||||| |  ||||  |||||    
T  19053498 tctttagatcttctacaatagtcttttagcttctctttgtgcttctgatgctcttatatattttcagaccttgttaaattttaatttatggtccagcaca 19053597  T
Q  156 cttgatcatatattaacatatccaattgttgtttaatac-tttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||| ||||||||| |||||| |||||||  ||||||| ||||||||||||||||   ||||||||||| |||||| ||||||    
T  19053598 cttgaacatatattagcatatctaattgtt-cttaatacttttgttatcatcaaaactctagaggaattgaacaaaccaatttt 19053680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 12380501 - 12380593
Alignment:
Q  99 tctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaa 191  Q
    ||||||||||||||||||| | ||| |||||||||||||||| |  |||||||||||||| | |||||||||  ||||||||||||| |||||    
T  12380501 tctgatgctcttatacatgctcagaacttgttaaattttaatatatggtcatgcacacttaaacatatattagaatatccaattgttctttaa 12380593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 21821955 - 21821855
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || ||||||| |||||| || |||||||||| |||| |||||||||| |||||||  || |||||||||||||| ||||||| ||||||||    
T  21821955 gttgacttctggttgacctttcttcatattttctaccatagtcttcgagcttctcttatgcttcaaattctcttatacatgttcagaccttattaaattt 21821856  T
Q  137 t 137  Q
    |    
T  21821855 t 21821855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 20245687 - 20245820
Alignment:
Q  97 cttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactt 196  Q
    |||| |||||||| |||||||||||||||||| ||||||||| ||    ||| | || |||| | |||||| || |||||||||||||| || |||||||    
T  20245687 cttcagatgctctcatacatgtttagaccttgataaattttagtccatagtcctacaaacttaaacatatactagcatatccaattgttcttcaatactt 20245786  T
Q  197 tgttatcatcaaaaacat-agaggaattgtacaaa 230  Q
    |||||||||| ||||||| ||||| ||||||||||    
T  20245787 tgttatcatc-aaaacatcagaggcattgtacaaa 20245820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 22222402 - 22222325
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    ||||||||| |||||||||  || |||| ||||| || ||||||||||||||||||||| | ||||||||||||||||    
T  22222402 cacacttgaacatatattagtatgtccacttgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaa 22222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 23088018 - 23088084
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgt-tgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || |||||||||||| ||||||  ||||||||||||||||||||||||||    
T  23088018 ggtcctgcacacttgaacaaatattaacatattcaattgaatgtttaatactttgttatcatcaaaa 23088084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 25650859 - 25650791
Alignment:
Q  146 gtcatgcacacttgatcatatattaacatatccaattg----ttgtttaatactttgttatcatcaaaa 210  Q
    |||||| |||||||| || |||||||||||||||||||    || ||||||||||||||||||||||||    
T  25650859 gtcatgtacacttgaacaaatattaacatatccaattgacatttttttaatactttgttatcatcaaaa 25650791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 22316422 - 22316346
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtac 227  Q
    ||||||||||| ||||| |||  || |||||||||| || ||||||||||||||||||||| | ||||||| ||||||    
T  22316422 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcatcaaaatcctagaggacttgtac 22316346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 12417342 - 12417259
Alignment:
Q  129 ttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg--ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||  |||| |||| ||||||||||| || |||||| ||||||||||||   | |||||||| |||||||||||||||    
T  12417342 ttaaatttttgtctttggtcctgcacacttgaacaaatattagcatatccaattgacatttttaataccttgttatcatcaaaa 12417259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 2652131 - 2652197
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || |||||| ||||||||||||  | |||||||| |||||||||||||||    
T  2652131 ggtcgtgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaa 2652197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 8912085 - 8912135
Alignment:
Q  176 tccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||||| || ||| ||||||||||||||||| | |||||||||||||    
T  8912085 tccaattgttcttcaatgctttgttatcatcaaaatcctagaggaattgta 8912135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10250221 - 10250289
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || |||||| ||||||||||||   || |||||||| |||||||||||||||    
T  10250221 ggtcctgcacacttgaacaaatattatcatatccaattgaatttttttaataccttgttatcatcaaaa 10250289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 4746001 - 4745944
Alignment:
Q  153 acacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||  |||||||||||||||||||| || || |||| ||| ||||||||||||    
T  4746001 acacttgaatatatattaacatatccaattattcttcaataatttattatcatcaaaa 4745944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 8502758 - 8502803
Alignment:
Q  165 atattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||| ||||||||  || ||||||||||||||||||||    
T  8502758 atattaacatattcaattgttcattcatactttgttatcatcaaaa 8502803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 11700985 - 11701046
Alignment:
Q  149 atgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||| |||||| || ||||||||||||| |||| || ||| |||||||||||| |||||||    
T  11700985 atgcatacttgaacaaatattaacatatctaattattctttcatactttgttattatcaaaa 11701046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 12333781 - 12333733
Alignment:
Q  175 atccaattgttgtttaatactttgttatcatcaaaaacatagaggaatt 223  Q
    ||||||||||| || |||| |||||||||||||||| | ||||||||||    
T  12333781 atccaattgttcttcaatattttgttatcatcaaaaccctagaggaatt 12333733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 14427038 - 14426877
Alignment:
Q  77 atctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatat 176  Q
    |||||||||||||||   |||||||||||||||||||||| || |||| |||||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  14427038 atctttgagcttctcctgtgcttctgatgctcttatacattttcagactttgttaaattttaatctttggtcctgcacacttgaacatatattagcatat 14426939  T
Q  177 ccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  14426938 ccaattgttctttaatactttgttatcatcaaaatcttagaggaattgtacaaaccaatttt 14426877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 38076195 - 38076005
Alignment:
Q  40 gacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaa 139  Q
    ||||| || ||||||| |||||| ||||||||||||| ||| | ||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||    
T  38076195 gacttctggttgacctttcttcaaatcttctaccatagtctattagcttctattgtgcttctgatgctcttatacatgttcagaccttgttaaattttaa 38076096  T
Q  140 tcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    | |  ||| |||||||||||| |||||||||  ||||| ||||||| || ||||||||||| ||||||||| | |||||||||||||||||    
T  38076095 tatatggttatgcacacttgagcatatattagtatatctaattgttcttcaatactttgttgtcatcaaaatcttagaggaattgtacaaa 38076005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 9796435 - 9796608
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || |||| || ||||||||||||||||| ||  |||  ||||||| |  ||||||||||||||||||||||||| ||||||||||||||||    
T  9796435 gttgacttctgattgaactttcttcagatcttctaccgtagccttgtagcttcttttgtgcttctgatgctcttatacatgttcagaccttgttaaattt 9796534  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||  | || ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  9796535 taatctatgatcctgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaa 9796608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 17119286 - 17119486
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctctt-atacatgtttagaccttgtt 130  Q
    |||| |||||||| || |||||||  ||||||||||||||||||| ||||| || ||||||  |||||||||||||||| ||||||||| |||| |||||    
T  17119286 aaggtgttgacttctggttgaccttccttcagatcttctaccatagtctttaagtttctcttgtgcttctgatgctctttatacatgttcagactttgtt 17119385  T
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    ||||||||||||  |||| ||||||||| | |||||||||||||| | ||| ||| ||||||||||||||||||| |||| | || ||||||||||||||    
T  17119386 aaattttaatctatggtcctgcacacttaaacatatattaacataccaaatagttctttaatactttgttatcataaaaaccttataggaattgtacaaa 17119485  T
Q  231 c 231  Q
    |    
T  17119486 c 17119486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 4514934 - 4515111
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgtt 130  Q
    |||| |||||||| || ||||| | |||| ||||||||||||||| |||||  ||||||||   ||||||||||||||||||||||||| ||||||||||    
T  4514934 aaggtgttgacttctggttgacatttctttagatcttctaccatagtcttttggcttctctttgtgcttctgatgctcttatacatgttcagaccttgtt 4515033  T
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaa 208  Q
    |||||||||| |  |||| ||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||    
T  4515034 aaattttaatatatggtcctgcacacttgaacatatattaacatatccagttgtttttcaatactttgttatcatcaa 4515111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 4767535 - 4767328
Alignment:
Q  31 taaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtt 130  Q
    ||||| |||||||| || ||||||| |||| ||||||||||  | | | |||||||||||| | ||| | || |||| ||||||||||| ||||||||||    
T  4767535 taaggtgttgacttctggttgacctttctttagatcttctataaaagtttttgagcttctcgcgtgcatatggtgctgttatacatgttcagaccttgtt 4767436  T
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    |||||| |||||   ||| ||||||||||| ||||||||| |||||| |||| || |||||||||||||||||||||||| | |||||||||||||||||    
T  4767435 aaatttaaatctatcgtcctgcacacttgaacatatattagcatatctaattattctttaatactttgttatcatcaaaaccttagaggaattgtacaaa 4767336  T
Q  231 ctaatttt 238  Q
    | ||||||    
T  4767335 ccaatttt 4767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 13291473 - 13291331
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||||||||||  ||||| |||  ||||||||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||| || |||||    
T  13291473 tgcttctgatgctcttatttatgttcagattttgttaaattt-aatctttggtcctgcacacttgaacatatattaacatatctaattgttcttcaatac 13291375  T
Q  195 tttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    |||||||| ||||||    |||||||||||||||||| ||||||    
T  13291374 tttgttattatcaaatctctagaggaattgtacaaaccaatttt 13291331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 17034313 - 17034140
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    ||||||||| || ||||||| ||||||||||||||| || | ||||    |||||||   | || ||||||||||||||||||| | ||||||||||||     
T  17034313 agttgacttttggttgacctttcttcagatcttctaacaga-tcttatttcttctcttgagtttttgatgctcttatacatgttcaaaccttgttaaata 17034215  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||  | || ||||||||||| ||| |||||||||||||||||||| || ||||| |||||||||||||||    
T  17034214 ttaatctatgatcgtgcacacttgaacatgtattaacatatccaattgttcttcaatacattgttatcatcaaaa 17034140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 20311464 - 20311342
Alignment:
Q  108 cttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatca 207  Q
    ||||||||| || | |||||||||||||||| | |  |||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||    
T  20311464 cttatacatattgataccttgttaaattttattttatggtcatgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatca 20311365  T
Q  208 aaaacatagaggaattgtacaaa 230  Q
    |||   |||||||||| ||||||    
T  20311364 aaactctagaggaattatacaaa 20311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 17637329 - 17637148
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtc 148  Q
    ||||||| | |||| ||||| ||||||| |||||  |||| |||  ||||||||||||| || |||||||| |||||||||| ||||||||| |  |||     
T  17637329 ttgaccttttttcatatcttttaccatagtctttttgcttatcttgtgcttctgatgcttttgtacatgttcagaccttgtttaattttaatatatggtt 17637230  T
Q  149 atgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
     | || |||||| ||||||| | |||||||||||||| |||| || ||||||||||||||||   |||||||||||||||||    
T  17637229 ctccatacttgaacatatatcagcatatccaattgttctttactaatttgttatcatcaaaacactagaggaattgtacaaa 17637148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 5554766 - 5554685
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttata 113  Q
    |||| |||||||| || ||||||| |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  5554766 aaggcgttgacttttggttgacctttcttcagatcttctaccatagtctttgagcttctcttgtgcttctgatgctcttata 5554685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 14332528 - 14332721
Alignment:
Q  19 atttcttcttaa-taaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctc-ttatacat 116  Q
    |||||||||||  ||||| |||||||| || ||||||| |||| ||||||||||||||| ||||| ||||||||   ||||| | |||||| ||||||||    
T  14332528 atttcttcttatctaaggcgttgacttctggttgacctttctttagatcttctaccatagtcttttagcttctcatgtgcttataatgctctttatacat 14332627  T
Q  117 gtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||| | ||||||||||| |||||||   |||| |   |||   | ||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  14332628 gttcaaaccttgttaaaatttaatcaatggtcttttgcacaaaaacatatattagcatatccaactgttcttcaatactttgttataatcaaaa 14332721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 5554687 - 5554623
Alignment:
Q  173 atatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaattt 237  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  5554687 atatccaattgttctttaatattttgttatcatcaaaaacttagaggaattgtacaaaccaattt 5554623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 4244324 - 4244439
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    |||||| |||||||| ||| ||||| ||| |||| |||||||||||||  | || ||||||||||| || |||||||| |||||||||||| || |||      
T  4244324 tgcttcagatgctctcatatatgttcagaacttgataaattttaatctatgatcttgcacacttgaacacatattaacttatccaattgttcttcaatgt 4244423  T
Q  195 tttgttatcatcaaaa 210  Q
    ||||||||||||||||    
T  4244424 tttgttatcatcaaaa 4244439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 4253249 - 4253335
Alignment:
Q  125 cttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatcc-aattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||| || ||||||||||||| |||||||    
T  4253249 cttgttaaattttaatctacggtcctgcacacttgaacacatattaacttatccaaattgttcttcaatactttgttattatcaaaa 4253335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 14252248 - 14252358
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctc-ttatacatgtttagaccttgtt 130  Q
    |||||||| |||| |  ||||||| |||| ||||||||||||||| ||||| ||||||||   ||||||| |||||| ||||||||||| | ||||||||    
T  14252248 aaggagttaacttctagttgacctttctttagatcttctaccatagtcttttagcttctcaagtgcttctaatgctctttatacatgttcaaaccttgtt 14252347  T
Q  131 aaattttaatc 141  Q
    ||| |||||||    
T  14252348 aaaatttaatc 14252358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 46349400 - 46349482
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    |||||||||||||| || ||||||| |||| | |||||| || ||||||||||||||||||||| | |||| |||||||||||    
T  46349400 tcatgcacacttgaacaaatattaatatattctattgttcttcaatactttgttatcatcaaaatcttagaagaattgtacaa 46349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 16198839 - 16198648
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || ||||||| |||||| ||||||||||| | ||||||||||||||   ||||| ||||||| |  ||| ||||||   |||| |  || |    
T  16198839 gttgacttctggttgacctttcttcatatcttctaccaaagtctttgagcttctcatgtgcttatgatgctttcgtacttgtttaatacttgatggatat 16198740  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
     |||||  | || ||||||||||| || ||||||  |||||||||| || || ||||||||||||||| ||||| | |||| |||||||||||    
T  16198739 -aatctatgttcctgcacacttgaacaaatattagtatatccaattattcttcaatactttgttatcaacaaaaccttagatgaattgtacaa 16198648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 30212510 - 30212598
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    |||| |||||| |||||||||||||||  |||||||  |||||||||| ||||||||||||   |||||||||| ||||||||| ||||    
T  30212510 tgcatacttgaacatatattaacatatataattgttcgttaatactttattatcatcaaaactctagaggaattatacaaactattttt 30212598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 19705754 - 19705834
Alignment:
Q  131 aaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| |||  |||||||||||||||| || |||||| ||||||||||||    ||||||||||||||||||||||||    
T  19705754 aaattttagtctatggtcatgcacacttgaacaaatattagcatatccaattgaacttttaatactttgttatcatcaaaa 19705834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 11044998 - 11045061
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||| | ||||||||| ||||||  |||||| || |||||||||||||||||||||    
T  11044998 tcatgcacacttaaacatatattagcatatctcattgttcttcaatactttgttatcatcaaaa 11045061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 5797988 - 5797907
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgtt-gtttaatactttgttatcatcaaaaacatag-aggaattgtacaaa 230  Q
    ||||||||||| |||| |||||||||||||||||||  |||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  5797988 tgcacacttgaacatacattaacatatccaattgttcttttagtaccttgttatcatc-aaaacttagaaggaattgtacaaa 5797907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 14328645 - 14328743
Alignment:
Q  112 tacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| | ||||||||||| |||||||   |||| |   ||| ||| ||||||||| ||||||||| |||| || |||||||||||||||||||||    
T  14328645 tacatgttcaaaccttgttaaaatttaatcaatggtcttttgcacatgaacatatattagcatatccaactgttcttcaatactttgttatcatcaaaa 14328743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 5638376 - 5638328
Alignment:
Q  162 catatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||||| ||||||| || ||||||||||||| |||||||    
T  5638376 catatattaacatatctaattgttcttcaatactttgttattatcaaaa 5638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 19306777 - 19306694
Alignment:
Q  59 ttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgttaaattttaatc 141  Q
    ||||| |||||||||||| ||||| ||||| |||   | ||| ||||| ||||||||||||||||| ||| |||||||||||||    
T  19306777 ttcagttcttctaccatagtcttttagcttttctttgtacttttgatgttcttatacatgtttagatctttttaaattttaatc 19306694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 23953688 - 23953633
Alignment:
Q  155 acttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||| || |||||  ||| |||||||||| ||||||||||||||||||||||||    
T  23953688 acttgaacaaatattggcatttccaattgttctttaatactttgttatcatcaaaa 23953633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 6713464 - 6713532
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||| ||||||| || |||||||||||||||||||   || |||||||| |||||||||||||||    
T  6713464 ggtcttgcgcacttgaacaaatattaacatatccaattgacattttttaataccttgttatcatcaaaa 6713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 13340457 - 13340407
Alignment:
Q  176 tccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||||| || ||||||||||||||||||||| | ||||||| |||||    
T  13340457 tccaattgttcttcaatactttgttatcatcaaaaccttagaggacttgta 13340407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 14073089 - 14073157
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||||| || |||||| ||||||||||||   || |||||||| |||||||||| ||||    
T  14073089 ggtcatgcacacttgaacaaatattagcatatccaattgatattttttaataccttgttatcataaaaa 14073157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 27405795 - 27405714
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtt 119  Q
    ||||||||||| || || | |||||||||||||||||  | ||||| |||||||||  |||||||||| |||||||| |||||    
T  27405795 gttgacttatggttaacttttcttcagatcttctacc-gagtcttttagcttctcttgtgcttctgatactcttatatatgtt 27405714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 13932299 - 13932360
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||||||||||||||||    |||||||| |||||||||||||||    
T  13932299 tgcacacttgaacaaatattaacatatccaattgaacttttaataccttgttatcatcaaaa 13932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10852163 - 10852230
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg--ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || |||||| ||||||||||||   | |||||||| |||||||||||||||    
T  10852163 ggtcctgcacacttgaacaaatattagcatatccaattggcatttttaataccttgttatcatcaaaa 10852230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 22141147 - 22141208
Alignment:
Q  153 acacttgatcatatattaacatatccaattg----ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| || |||||| ||||||||||||    || ||||||||||||||||||||||||    
T  22141147 acacttgaacaaatattagcatatccaattgacaattttttaatactttgttatcatcaaaa 22141208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 24308729 - 24308523
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || ||||||| |||| ||||||||||||||| ||||||| |||||||    | ||||||||||||||||||||| | |||||||||    
T  24308729 aaggtgttgacttctggttgacctttctttagatcttctaccatagtctttgatcttctcttggacatctgatgctcttatacatgttcaaaccttgtta 24308630  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||| |  |||| ||| ||||||| |||||||| |||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||    
T  24308629 aattttaatttatggtcctgcgcacttgaacatatattcacatatccaatttttatttaatactttgttatcatcaaaaccttagaggaattgtacaaac 24308530  T
Q  232 taatttt 238  Q
     ||||||    
T  24308529 caatttt 24308523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 23584744 - 23584556
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtc 148  Q
    ||||||| | |||||||||||||||||| |||||||| ||||||  ||||| ||||||||||||||||||| | ||||| |||||||||||||   ||||    
T  23584744 ttgacctttgttcagatcttctaccatagtctttgagtttctcttgtgcttatgatgctcttatacatgttcaaaccttattaaattttaatcaatggtc 23584645  T
Q  149 atgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
     ||| ||||||| ||||||||| ||||| |||||||| ||||| | |||  ||||||||||| | |||||||||||||||||| ||||||    
T  23584644 ctgcgcacttgaacatatattagcatattcaattgttctttaaca-ttttatatcatcaaaaccttagaggaattgtacaaaccaatttt 23584556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 57 - 230
Target Start/End: Original strand, 28890577 - 28890750
Alignment:
Q  57 tcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacac 156  Q
    |||||| ||||||||||| | ||||||||||| |||  ||||| ||||||||||||||||||  |||||||||| |||||||||||  |||| |||||||    
T  28890577 tcttcatatcttctaccaaactctttgagcttttcttctgcttttgatgctcttatacatgtccagaccttgttgaattttaatctatggtcctgcacac 28890676  T
Q  157 ttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    || |  |||||||| ||||||||||| || |||||||||||||||||||||||| | ||||||  |||||||||    
T  28890677 ttaaatatatattagcatatccaattattctttaatactttgttatcatcaaaaccttagaggggttgtacaaa 28890750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 25724479 - 25724290
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtc 148  Q
    ||||||| |||||| ||||||||||| | | ||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  25724479 ttgacctttcttcatatcttctaccaaagtattttaacttatcttatgtttctgatgctcttatacatgtttagaccttgttaaattttaatttatggtc 25724380  T
Q  149 atgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
     |||||| |||| ||||||||| |||||||||||||| || | |||||||||||||| || |    |||| || ||||||||||||||||    
T  25724379 ctgcacagttgaacatatattatcatatccaattgttcttcagtactttgttatcattaatactccagagaaaatgtacaaactaatttt 25724290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 12863736 - 12863844
Alignment:
Q  102 gatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgtta 201  Q
    |||||||||||| ||||| |||||||  ||||||||||| |  |||| ||||||||| | || |||||||||||||||||||||||| ||||||||||||    
T  12863736 gatgctcttatatatgttcagaccttaataaattttaatatatggtcctgcacacttaaacacatattaacatatccaattgttgttcaatactttgtta 12863835  T
Q  202 tcatcaaaa 210  Q
    |||||||||    
T  12863836 tcatcaaaa 12863844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 18527913 - 18527761
Alignment:
Q  78 tctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatc 177  Q
    ||||| |||||||||  ||||||||||||||||||| ||||| |||||||| |||||||||||||  | || ||||||||| | ||||| ||| ||||||    
T  18527913 tcttttagcttctcttgtgcttctgatgctcttatatatgttcagaccttgataaattttaatctatgatcctgcacacttaaacatattttagcatatc 18527814  T
Q  178 caattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
     ||||||| |||||||  ||||||| |||||||   |||||| ||||||||||    
T  18527813 taattgttctttaatatcttgttataatcaaaactttagaggtattgtacaaa 18527761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 24276973 - 24276858
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||   ||| | | ||| ||| |||||||||||||||||||||||| |  |||||    
T  24276973 tgcttctgatgctcttatacatgttcagaccttgttaaaaattaatctattgtcctacgcacatgaacatatattaacatatccaattgttctacaatac 24276874  T
Q  195 tttgttatcatcaaaa 210  Q
    ||||||||||||||||    
T  24276873 tttgttatcatcaaaa 24276858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 7321148 - 7321033
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||||||| ||||||||| |||||||| | |||||||||||  |||| ||||||||| | ||||||||| |||||  ||| ||| || |||||    
T  7321148 tgcttctgatgctctcatacatgttcagaccttgatgaattttaatctatggtcgtgcacacttaaacatatattagcatataaaatagttcttcaatac 7321049  T
Q  195 tttgttatcatcaaaa 210  Q
    ||||||||||||||||    
T  7321048 tttgttatcatcaaaa 7321033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 25727359 - 25727266
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatct 142  Q
    ||||||| ||||||||||||||| || | | ||| | ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25727359 ttgacctttcttcagatcttctagcaaagtattttaacttatcttatgcttctgatgctcttatacatgttcagaccttgttaaattttaatct 25727266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 13303526 - 13303605
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    ||||||||||| || ||||||  ||||||||||||| || |||| |||||||||||||||| | ||||||||||||||||    
T  13303526 tgcacacttgaacaaatattagtatatccaattgtttttcaatattttgttatcatcaaaaccttagaggaattgtacaa 13303605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 24502443 - 24502364
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    |||| ||||||  |||||||| |||||||||||||| ||||||||||| ||||||||||||   |||||| |||||||||    
T  24502443 tgcatacttgaatatatattagcatatccaattgttctttaatactttattatcatcaaaactttagaggtattgtacaa 24502364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 13645687 - 13645762
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    ||||||||||| ||||| |||  ||| ||||||||| || ||||||||||||||||||||| | |||||||||||||    
T  13645687 tgcacacttgaacatatgttagtata-ccaattgttattcaatactttgttatcatcaaaatcctagaggaattgta 13645762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 13746112 - 13746187
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    ||||||||||| ||||| |||  ||| ||||||||| || ||||||||||||||||||||| | |||||||||||||    
T  13746112 tgcacacttgaacatatgttagtata-ccaattgttattcaatactttgttatcatcaaaatcctagaggaattgta 13746187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 18789623 - 18789688
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||| |||||||||||  ||||||  | ||||||||||||| ||||||| ||||||||||||||||    
T  18789623 ggtcctgcacacttgaatatatatatatatatccaattgttctttaatattttgttatcatcaaaa 18789688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 24122100 - 24122196
Alignment:
Q  86 cttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaatt 182  Q
    |||||||  |||||| ||| |||| ||| ||||| | | |||| |||||||||||||  |||| ||||||||||| || |||||| |||||||||||    
T  24122100 cttctcttgtgcttcagatactctcatatatgttcataacttgataaattttaatctatggtcctgcacacttgaacacatattagcatatccaatt 24122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 27118353 - 27118265
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||||| || || |||  |||| |||||||| || |||||||| |||||||||||| | ||||| |||||||||| | ||||||    
T  27118353 tgcacacttgaacaaatgttactatattcaattgttcttcaatactttcttatcatcaaaaccttagagaaattgtacaagccaatttt 27118265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 17937683 - 17937746
Alignment:
Q  148 catgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||| ||||| || ||||||||||||||||||| |  |||||||| |||||||||||||||    
T  17937683 catgcacgcttgaacaaatattaacatatccaattgatcttttaataccttgttatcatcaaaa 17937746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 23192364 - 23192298
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || |||||| ||||||||||||  | |||||||| |||||||||||||||    
T  23192364 ggtcctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaa 23192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 23352849 - 23352781
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||||| || |||||| ||||||||||||   || |||||||| |||||||||||||||    
T  23352849 ggtcatgcatacttgaacaaatattagcatatccaattgacattttttaataccttgttatcatcaaaa 23352781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 17689721 - 17689782
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || ||||||||||||||||||| |  |||||||| |||||||||| ||||    
T  17689721 tgcacacttgaacaaatattaacatatccaattgatcttttaataccttgttatcattaaaa 17689782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 13281591 - 13281651
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || ||||||||||||  ||||||| ||| |||| || ||||||||||||    
T  13281591 tgcacacttgaacaaatattaacatattaaattgttttttcataccttattatcatcaaaa 13281651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 18566198 - 18566257
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| ||||| |||  || |||||||||| || |||||||||||||||||||||    
T  18566198 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcatcaaaa 18566257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 19143836 - 19144036
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    ||||||| || |||| || |||||| || |||| || || |||||||| ||||||  ||||||| ||||||||||||||||| |||||||||||||||||    
T  19143836 ttgacttctggttgaactttcttcatatattcttccgtagtctttgagattctcttgtgcttctaatgctcttatacatgttcagaccttgttaaatttt 19143935  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaattt 237  Q
    |||||  |||| | |||| |||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||| || |||| |||||||||| |||||    
T  19143936 aatctatggtccttcacaattgaacatatattagcatatccaattgttatttaatactttgttatcataaaaaacttataggagttgtacaaacaaattt 19144035  T
Q  238 t 238  Q
    |    
T  19144036 t 19144036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 20743235 - 20743435
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    ||||||| || |||| || |||||| || |||| || || |||||||| ||||||  ||||||| ||||||||||||||||| |||||||||||||||||    
T  20743235 ttgacttctggttgaactttcttcatatattcttccgtagtctttgagattctcttgtgcttctaatgctcttatacatgttcagaccttgttaaatttt 20743334  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaattt 237  Q
    |||||  |||| | |||| |||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||| || |||| |||||||||| |||||    
T  20743335 aatctatggtccttcacaattgaacatatattagcatatccaattgttatttaatactttgttatcataaaaaacttataggagttgtacaaacaaattt 20743434  T
Q  238 t 238  Q
    |    
T  20743435 t 20743435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 10646652 - 10646486
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    |||||||||| ||||| | |||||||||||| ||||||| ||||| |||||||||  || |||||||||||||||||||||| |||||||||||||||||    
T  10646652 ttgacttatggttgacatttcttcagatcttttaccatagtcttttagcttctcttgtgtttctgatgctcttatacatgttcagaccttgttaaatttt 10646553  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatca 204  Q
    | | |  |||| ||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  10646552 attatatggtcctgcacacttgaacatatgttaacatatccaattgttattcaatactttgttatca 10646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 8105919 - 8106120
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || ||||||| ||||||||| |||||||||| | ||||||||| |||  | ||||| || |||||||||||||| | |||||||||||| |    
T  8105919 gttgacttctggttgacctttcttcagatattctaccatagtttttgagcttttcttgttcttctaattctcttatacatgttcataccttgttaaatat 8106018  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatt 236  Q
    |||| |  |||| ||||||||  |  |||||||| |||||| |||| || |||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  8106019 taatatatggtcctgcacactataagatatattagcatatctaattattctttaatactttgttatcatcaaaaccctagaggaattgtacaaaccaatt 8106118  T
Q  237 tt 238  Q
    ||    
T  8106119 tt 8106120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 27707148 - 27706947
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| | |||||||| | |||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||| |  |||||||||||||    
T  27707148 gttgacttctacttgacctttattcagatcttctaccatagtctttgagtttctcttgtgcttctgatgctcttatacatgttcatgccttgttaaattt 27707049  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatt 236  Q
    |||| |  |||| ||||| ||||| |||  |||| |||||| |||| || ||||||||||||||| |||||||| | || | ||| ||||||||| ||||    
T  27707048 taatttatggtcttgcacgcttgaacattaattagcatatctaattattctttaatactttgttaccatcaaaaccttaaaagaaatgtacaaaccaatt 27706949  T
Q  237 tt 238  Q
    ||    
T  27706948 tt 27706947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 17891215 - 17891034
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggt 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||   ||||||||||||||||||||  ||| | ||||||||||||||||||||  |||    
T  17891215 ttgacatatcttcagatcttctaccatagtcttttagcttctcttggtgcttctgatgctcttataccagttcataccttgttaaattttaatctatggt 17891116  T
Q  148 catgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    | ||||||| | | ||||||||| |||||| ||||||| ||||||| ||||||||||||||||   |||||||||| ||||||    
T  17891115 cctgcacacctaa-catatattagcatatctaattgttctttaatattttgttatcatcaaaactctagaggaattatacaaa 17891034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 32957869 - 32958050
Alignment:
Q  50 tgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtca 149  Q
    |||||| |||||||||||  ||||||| |||||||||||||||| || |||||||||||| ||||||||| | |||||||||||||||||| |  | ||     
T  32957869 tgacctttcttcagatctaataccatagtctttgagcttctctcgtgtttctgatgctctcatacatgttcaaaccttgttaaattttaatatatgatct 32957968  T
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
     ||||||| || ||| ||| | |||||||||||||| ||||||| ||| ||||||||||||   ||||||||||||||||||    
T  32957969 cgcacactagaacatttataagcatatccaattgttctttaatattttattatcatcaaaattttagaggaattgtacaaac 32958050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 24865670 - 24865841
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    ||||||| || ||||||| |||||| ||||||||||| | | ||| | |||||||  |||||||||||||| |||| ||||| |||  ||||||||||||    
T  24865670 ttgacttctgattgacctttcttcatatcttctacca-agtattttaacttctcttgtgcttctgatgctcatatatatgttcagattttgttaaatttt 24865768  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||| |  | || |||| |||||| ||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  24865769 aatttatgatcctgcatacttgaccatatatcaacatatccaattgtttttatatactttgttatcatcaaaa 24865841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 956829 - 957002
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    |||||||||||| |||| || |||||||||||||||||| ||| ||| |||||||||| || |||||||| |||  || ||||| | |||||| ||||||    
T  956829 agttgacttatggttgatctttcttcagatcttctacca-aattttttagcttctctcgtgtttctgatgttctcgtatatgttcaaaccttgataaatt 956927  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||| |  | || ||||||||| | |||||| |||||||| |||| ||| || | |||||||||||||||||||    
T  956928 ttaatttatgttcctgcacacttaaacatatactaacatattcaatcgttcttcattactttgttatcatcaaaa 957002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 1783268 - 1783439
Alignment:
Q  38 ttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatttt 137  Q
    ||||||| || ||||||| |||| |||||||  |||||| ||||| || ||||||  ||||||| ||||||||||||||||| |  ||||||||||||||    
T  1783268 ttgacttctgattgacctttctttagatctttaaccatagtcttttagtttctcttgtgcttctaatgctcttatacatgttcattccttgttaaatttt 1783367  T
Q  138 aatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
     || |  | || ||||||||||| || |||||||  |||||||||||| || || ||||||||||||||||||    
T  1783368 -atttatgatcctgcacacttgaacacatattaaattatccaattgttcttcaaaactttgttatcatcaaaa 1783439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 4031290 - 4031203
Alignment:
Q  123 accttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||||||| |  | |||||||||||||| |||||||||||| ||| |||| || ||||||||||| ||||||||||||    
T  4031290 accttgttaaattttaatatatgatcatgcacacttgaacatatattaacacatctaattattctttaatactttattatcatcaaaa 4031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 26822674 - 26822761
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgttt-aatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| ||||||| | |||| ||||||||||||| ||||||    
T  26822674 cacacttaaacatatattagcatatccaattgttcttttaatactttgttattatcaaaaccttagatgaattgtacaaaccaatttt 26822761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 5265588 - 5265670
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatc 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||  |  | |||| |||| | ||||||||||||||||    
T  5265588 tgcttttgatgctcttatacatgtttagaccttgttaaattttattctatgaacctgcatactttaacatatattaacatatc 5265670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 12341682 - 12341759
Alignment:
Q  153 acacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    |||||| | ||||||||||||||| ||||| || ||||||||||||||||||||||||   |||||| ||||||||||    
T  12341682 acacttaaacatatattaacatattcaatttttctttaatactttgttatcatcaaaattttagaggcattgtacaaa 12341759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 7185342 - 7185252
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||| |||||||| || |||||| |||||||||||||  || ||||||||||||||||| ||| | |||| ||||||||||||| ||||||    
T  7185342 tcatgtacacttgaacaaatattagcatatccaattgtccttcaatactttgttatcatc-aaaccttagatgaattgtacaaaccaatttt 7185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 1775331 - 1775243
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||||| |||| |||| ||||||||||| || || |||| |||||||||||||||| | || || |||||||||| | ||||||    
T  1775331 tgcacacttgaacatagattagcatatccaattattattcaataatttgttatcatcaaaaccgtaaagaaattgtacaatccaatttt 1775243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 23022462 - 23022373
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaa 139  Q
    ||||||| |||||| ||||||||||| | ||||  |||||||||  ||||| ||||| ||||||| ||||| |||||||| ||||||||||    
T  23022462 ttgacctttcttcatatcttctacca-agtcttctagcttctcttttgcttatgatgttcttatatatgttcagaccttgataaattttaa 23022373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10924636 - 10924701
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||| |||||||||||  ||||||  | ||||||||||||| ||||||| ||||||||||||||||    
T  10924636 ggtcctgcacacttgaatatatatatatatatccaattgttctttaatattttgttatcatcaaaa 10924701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 15053396 - 15053496
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    ||||||||||||| || ||||| | | |||| ||||||||||||| ||||| |  ||| ||  ||||| ||||| ||||||||||||| |||||||||||    
T  15053396 aaggagttgacttttggttgacattt-ttcatatcttctaccatagtcttttactttcacttgtgcttatgatgttcttatacatgttcagaccttgtta 15053494  T
Q  132 aa 133  Q
    ||    
T  15053495 aa 15053496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 19142430 - 19142385
Alignment:
Q  178 caattgttgtttaatactttgttatcatcaaaaacatagaggaatt 223  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||    
T  19142430 caattgttctttaatactttgttatcatcaaaatcctagaggaatt 19142385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 20741829 - 20741784
Alignment:
Q  178 caattgttgtttaatactttgttatcatcaaaaacatagaggaatt 223  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||    
T  20741829 caattgttctttaatactttgttatcatcaaaatcctagaggaatt 20741784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 7560772 - 7560725
Alignment:
Q  163 atatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||  ||| ||||||| ||||||||||||||||||||||||    
T  7560772 atatattaactcatctaattgttctttaatactttgttatcatcaaaa 7560725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 18361421 - 18361339
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg--ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||  |||| || |||||||| || |||||| ||||||||||||  || |||||||| |||||||||||||||    
T  18361421 taaattttagtctatggtcctgaacacttgaacaaatattagcatatccaattgacttttttaataccttgttatcatcaaaa 18361339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 9065834 - 9065900
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    |||| ||||||||||| || ||||||| ||||||||||| |  |||||||| |||||||||||||||    
T  9065834 ggtcctgcacacttgaacaaatattaatatatccaattgatattttaataccttgttatcatcaaaa 9065900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 15304943 - 15305009
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||||||||||| || |||||| ||||||||||||    |||||||| |||||||||||||||    
T  15304943 ggtcatgcacacttgaacaaatattagcatatccaattgaacttttaataccttgttatcatcaaaa 15305009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 8259626 - 8259730
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctc-ttatacatgtttagaccttgttaaat 134  Q
    |||||||||||| ||||||| || ||| ||||||||||| | ||||| ||||||||   ||||| |||||| | ||||| |||||| ||||||| |||||    
T  8259626 agttgacttatggttgacctttcatcatatcttctacca-agtcttttagcttctcatgtgcttttgatgcgctttatatatgtttggaccttgataaat 8259724  T
Q  135 tttaat 140  Q
     |||||    
T  8259725 gttaat 8259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 9396700 - 9396619
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaatt-gttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||  |||||||||||||||| || |||||| |||||||||||     |||||||| |||||||||||||||    
T  9396700 taaattttagtctatggtcatgcacacttgaacaaatattagcatatccaattcaacttttaataccttgttatcatcaaaa 9396619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 9763026 - 9763107
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||  |||| ||||||||||| || |||||| ||||||||||||    |||||||| |||||||||||||||    
T  9763026 taaattttagtctaaggtcctgcacacttgaacagatattagcatatccaattgaacttttaataccttgttatcatcaaaa 9763107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 8183349 - 8183410
Alignment:
Q  153 acacttgatcatatattaacatatccaattg----ttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| || |||||| ||||||||||||    || ||||||||||||||||||||||||    
T  8183349 acacttgaacaaatattagcatatccaattgacaattttttaatactttgttatcatcaaaa 8183410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 16033448 - 16033488
Alignment:
Q  50 tgacctatcttcagatcttctaccataatctttgagcttct 90  Q
    |||||| || ||||||||||||||||| |||||||||||||    
T  16033448 tgacctttcatcagatcttctaccatagtctttgagcttct 16033488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 20053619 - 20053678
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| ||||| |||  || |||||||||| || |||||||||||||||||||||    
T  20053619 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcatcaaaa 20053678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 27765489 - 27765297
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || ||||| | |||||||||||||||||||| |||||||| ||||||  ||||||||||  ||||||| | ||| | ||||||||||| ||    
T  27765489 gttgacttctggttgacatttcttcagatcttctaccatagtctttgagattctcttgtgcttctgatattcttataaacgttcaaaccttgttaaaatt 27765390  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    || |||  |||| |||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||    
T  27765389 tattctatggtcctgcacatttgaacatatattaacatatccaattattctttaatactttgttatcatcaaaatcttagaggaattgtacaa 27765297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 16586746 - 16586579
Alignment:
Q  59 ttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacactt 158  Q
    |||||||||||||||||| | |||||||||||||  |||||||||||||||||||||| || | |||||||||||||||||| |  |||| |||| | ||    
T  16586746 ttcagatcttctaccatagtatttgagcttctcttgtgcttctgatgctcttatacattttcaaaccttgttaaattttaatttatggtcctgcaaattt 16586647  T
Q  159 gatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    || ||||||||| ||||| ||||| || |||||||||||||||||||||||| | |||||||||||||    
T  16586646 gaacatatattagcatattcaattcttttttaatactttgttatcatcaaaatcttagaggaattgta 16586579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 18848618 - 18848824
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || ||||||| |||||||||||||||||||| | | | |||||||||  ||||| ||||| | ||||| ||||||| | |||||||    
T  18848618 aaggcgttgacttctggttgacctttcttcagatcttctaccatagtttctcagcttctcttgtgcttttgatgttgttatagatgtttaaaacttgtta 18848717  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||| |  |||  || |||||||| ||||||||| |||||||||||||| || |||||||||||||||| ||||   ||||| ||||||||||||    
T  18848718 aattttaatatatggttctgtacacttgaacatatattatcatatccaattgttcttcaatactttgttatcataaaaactctagagaaattgtacaaac 18848817  T
Q  232 taatttt 238  Q
     ||||||    
T  18848818 caatttt 18848824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 23959636 - 23959808
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    ||||||||| |  ||||||| |||||||||||||||||| | ||||  |||||||||  |||||| || ||||||||||||||| | |||||||||||||    
T  23959636 agttgacttctagttgacctttcttcagatcttctacca-agtcttccagcttctctagtgcttcagacgctcttatacatgttcataccttgttaaatt 23959734  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaa 209  Q
    ||||| |  |||| | ||||||||| ||||||||| |||||| | ||||| |||||||||||||||||||||||    
T  23959735 ttaatatatggtcctccacacttgaacatatattagcatatcaagttgttatttaatactttgttatcatcaaa 23959808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 35665984 - 35665811
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgat-gctcttatacatgtttagaccttgttaaatt 135  Q
    |||||||| || ||||| | |||||||||||||||||| | ||||| || || ||| || ||||| || | ||||||||||||||||||||||| |||||    
T  35665984 gttgacttctggttgacttttcttcagatcttctacca-agtcttttagtttttcttatacttctaattgttcttatacatgtttagaccttgtcaaatt 35665886  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||  | || |||| |||| | ||||||||||||||| |||||||| ||||||| || |||||||||||||    
T  35665885 ttaatctatgatcgtgcatacttaaacatatattaacatattcaattgttttttaatatttcgttatcatcaaaa 35665811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 22311393 - 22311200
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatct-ttgagcttctctcatgcttctgatgctcttatacatgtttag-accttgttaaat 134  Q
    |||||||| || ||||||| |||| ||||||||||||||| ||| |||||||||||| |||||||||||||||| ||| ||||| |  || ||| |  ||    
T  22311393 gttgacttctggttgacctttctttagatcttctaccatagtctattgagcttctcttatgcttctgatgctctaatagatgttcaatactttgatggat 22311294  T
Q  135 tttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
     | | | |  | || ||||||||||| || ||||||  ||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||    
T  22311293 at-attatatgatcctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaa 22311200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 13074082 - 13074168
Alignment:
Q  122 gaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaa 208  Q
    |||||||||||||||||||||  ||| ||||||| || | ||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  13074082 gaccttgttaaattttaatctatggttatgcacatttaaacatatattagcatattcaattgttttttaatactttgttatcatcaa 13074168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 22268948 - 22269120
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    ||||||||| || || |||| ||||||||||||||||| || ||||| ||||||||| || ||||||||||||| ||| || || |||||||| ||||||    
T  22268948 agttgacttctggtttacctttcttcagatcttctacc-tagtcttttagcttctcttatacttctgatgctctaatatattttcagaccttgataaatt 22269046  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||  |||| ||||   || |  |||||||| |||||||| || || || | |||||||||||||||||||    
T  22269047 ttaatctatggtcctgca-ttttaaatatatattagcatatccattttttcttcattactttgttatcatcaaaa 22269120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 28449337 - 28449231
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| |  ||||||| |||||||||||||||||||| ||| | |||||||||  |||||||||| |||||||||||||| | |||||| ||    
T  28449337 aaggcgttgacttctagttgacctttcttcagatcttctaccatagtctattagcttctcttgtgcttctgattctcttatacatgttcataccttgcta 28449238  T
Q  132 aatttta 138  Q
    |||||||    
T  28449237 aatttta 28449231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 20587025 - 20586942
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtaca 228  Q
    |||| ||||||||||| | |||||||||||||| |||| || |||  ||||||| ||||||||||| |||||||||||||||||    
T  20587025 ggtcctgcacacttgaacttatattaacatatctaatttttcttttgtactttgctatcatcaaaaccatagaggaattgtaca 20586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 19564982 - 19565046
Alignment:
Q  57 tcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgttta 121  Q
    ||||||| |||||||||||| |||||||||||||||  ||||||||||||| | |||||||||||    
T  19564982 tcttcaggtcttctaccatagtctttgagcttctcttgtgcttctgatgctttaatacatgttta 19565046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 20588610 - 20588519
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaat 140  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||  ||| ||||||||||| || |||||  | || |||||||| ||||||    
T  20588610 ttgacctttcttaagatcttctaccatagtctttgagcttctcttttgcatctgatgctctcatgcatgtacaaactttgttaaaatttaat 20588519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 21547965 - 21547886
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    |||||||||  | ||||||  ||||||||||||| || ||||||||| ||||||||||| | ||||||||||||||||||    
T  21547965 cacacttgaaaaaatattagtatatccaattgttcttcaatactttggtatcatcaaaaccttagaggaattgtacaaac 21547886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 42256589 - 42256636
Alignment:
Q  163 atatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  42256589 atatattagcatatccaattgttctttaatactttgttatcatcaaaa 42256636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 17569323 - 17569241
Alignment:
Q  103 atgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt 185  Q
    ||||||||||| ||||| |||||||| |||||||||||||  |||||| ||||||| | ||||||||| ||||| || |||||    
T  17569323 atgctcttatatatgttcagaccttgataaattttaatctatggtcatacacacttaaacatatattagcatattcacttgtt 17569241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 15375926 - 15376042
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt-gtttaata 193  Q
    |||||||||| |||||||| ||||| |||||||| ||||||||||||    ||| |  |||||| | |||||| ||  |||||||||||||  |||||||    
T  15375926 tgcttctgatactcttatatatgttcagaccttgataaattttaatcaatagtcctatacacttaaacatatactagtatatccaattgttcttttaata 15376025  T
Q  194 ctttgttatcatcaaaa 210  Q
    |||| ||||||||||||    
T  15376026 ctttattatcatcaaaa 15376042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 21748305 - 21748222
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatc-tttgagcttctctcatgcttctgatgctcttatacatgtt 119  Q
    |||||||| || ||||||| |||||||||||||||||||| || ||| |||||||||  || |||| ||||||| |||||||||    
T  21748305 gttgacttgtggttgacctttcttcagatcttctaccatagtcttttaagcttctcttgtgtttctaatgctctaatacatgtt 21748222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 24764199 - 24764124
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgt 225  Q
    ||||||||||| || ||||||  |||||||| |||| || ||||||||||||||||||||| | ||||| ||||||    
T  24764199 tgcacacttgaacaaatattagtatatccaagtgttcttcaatactttgttatcatcaaaatcttagagaaattgt 24764124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 18038706 - 18038792
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgtt-gtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    ||||| |||||||||| |||| |||| ||||||||||||||  |||||||| |||||||||| |||| |  ||||| ||||||||||    
T  18038706 ggtcacgcacacttgaacatacattagcatatccaattgttcttttaataccttgttatcattaaaacctaagaggcattgtacaaa 18038792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 21585049 - 21585107
Alignment:
Q  173 atatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||| ||| || |||||||||||||| |||||| | ||||||||||||||||||    
T  21585049 atatccaatcgttcttcaatactttgttatcctcaaaaccttagaggaattgtacaaac 21585107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 25916278 - 25916196
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    |||||||||||| | || ||||||  ||||||||||||| || ||||||||||||| |||||||   |||||||||| |||||    
T  25916278 tcatgcacacttaaacaaatattagtatatccaattgttcttcaatactttgttatgatcaaaactttagaggaattatacaa 25916196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 13073936 - 13074010
Alignment:
Q  57 tcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaa 132  Q
    |||||||||||||||||| | ||||| | |||||||  ||||||| ||||||||||| ||||| | ||||||||||    
T  13073936 tcttcagatcttctacca-agtcttttaacttctcttgtgcttctaatgctcttatatatgttcataccttgttaa 13074010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 21548069 - 21547998
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatc-tttgagcttctctcatgcttctgatgctcttatacatgtt 119  Q
    ||||||| |||||||||||||||||| | || |||||||||||||  | ||||||||||| | |||||||||    
T  21548069 ttgacctttcttcagatcttctaccacagtcttttgagcttctcttgtacttctgatgctttaatacatgtt 21547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 17417269 - 17417199
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgct 107  Q
    |||||||| || ||||| | ||||||||||||||||||   ||||||||||| |||  |||||||||||||    
T  17417269 gttgacttctgattgacatttcttcagatcttctaccaatgtctttgagcttttcttgtgcttctgatgct 17417199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 19877833 - 19877711
Alignment:
Q  108 cttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatca 207  Q
    |||||||||||| | |||||||||||||||| ||   |||| || | | || | | |||||||   |||| | ||||| |||||||||||||||||||||    
T  19877833 cttatacatgttcataccttgttaaattttattcgatggtcctgaataatttaacgtatattagtttatcaagttgttctttaatactttgttatcatca 19877734  T
Q  208 aaaacatagaggaattgtacaaa 230  Q
    |||   |||| ||||||||||||    
T  19877733 aaacgttagaagaattgtacaaa 19877711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 21578363 - 21578449
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatc-tttgagcttctctca-tgcttctgatgctcttatacatgttta 121  Q
    |||||||| || ||||||| ||| ||||||||||||||||||| ||| ||||||| | | ||||| ||||||| | |||||||||||    
T  21578363 gttgacttctggttgacctttctccagatcttctaccataatcttttaagcttctgttagtgcttttgatgctttaatacatgttta 21578449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 26654379 - 26654329
Alignment:
Q  176 tccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||||| || ||||||||||||||||||||| |  ||||||||||||    
T  26654379 tccaattgttcttcaatactttgttatcatcaaaacctcagaggaattgta 26654329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 17417130 - 17417077
Alignment:
Q  177 ccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    ||||||||| || |||||||||||||||||||||   || ||||||||||||||    
T  17417130 ccaattgttcttcaatactttgttatcatcaaaactttaaaggaattgtacaaa 17417077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 24302650 - 24302587
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||| ||||||||||||   || |||||||| |||||||||||||||    
T  24302650 tgcacacttgaacaaatattagcatatccaattgacattttttaataccttgttatcatcaaaa 24302587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 25189749 - 25189812
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg---ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||| ||||||||||||   || |||||||| |||||||||||||||    
T  25189749 tgcacacttgaacaaatattagcatatccaattgacattttttaataccttgttatcatcaaaa 25189812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 25348471 - 25348530
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| ||||| |||  ||||| ||||||| || |||||||||||||||||||||    
T  25348471 tgcacacttgaacatatgttagtatatc-aattgttcttcaatactttgttatcatcaaaa 25348530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 29410053 - 29410137
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatt 236  Q
    ||||||| | || |||||| |||||  ||||||| || ||||||||| |||||||||||    ||||||||||||||||| ||||    
T  29410053 cacactttaacaaatattagcatatttaattgttcttcaatactttgctatcatcaaaatttcagaggaattgtacaaaccaatt 29410137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 33241008 - 33241072
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgttt-aatactttgttatcatcaa 208  Q
    |||| |||||| |||| || |||||| |||||||||||| | ||| |||||||||||||||||||    
T  33241008 ggtcttgcacatttgaacaaatattagcatatccaattgatcttttaatactttgttatcatcaa 33241072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 33248929 - 33248993
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgttt-aatactttgttatcatcaa 208  Q
    |||| |||||| |||| || |||||| |||||||||||| | ||| |||||||||||||||||||    
T  33248929 ggtcttgcacatttgaacaaatattagcatatccaattgatcttttaatactttgttatcatcaa 33248993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 33439190 - 33439392
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctca-tgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    ||||||||||| || |||| || ||||||||||||||| | ||||| | |||||||   ||||||||||||||||||||||||| | | ||| ||||| |    
T  33439190 gttgacttatggtttacctttcatcagatcttctaccaaagtcttttaacttctctttgtgcttctgatgctcttatacatgttcatatctttttaaaat 33439289  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaat 235  Q
    |||||||  |||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||   |||||||||||||||||| |||    
T  33439290 ttaatctatggtcctgcacacttgatcatatattagcatatctaattgttctttaataccttgttatcatcaaaattctagaggaattgtacaaaccaat 33439389  T
Q  236 ttt 238  Q
    |||    
T  33439390 ttt 33439392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 14580470 - 14580346
Alignment:
Q  86 cttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt 185  Q
    |||||||  |||||||| |||| |||||||| |||||||||||||||||||||||||  | || ||||| ||||| |||||||||||||||| |||||||    
T  14580470 cttctcttgtgcttctggtgcttttatacatatttagaccttgttaaattttaatctaagatcctgcactcttgaacatatattaacatatctaattgtt 14580371  T
Q  186 gtttaatactttgttatcatcaaaa 210  Q
     ||||||||||||||||||||||||    
T  14580370 ctttaatactttgttatcatcaaaa 14580346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 12398089 - 12398229
Alignment:
Q  98 ttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatacttt 197  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||   ||||||||||||||| ||||||||| ||||| ||||| || || ||||||||    
T  12398089 ttctgatgctcttatacacatccagaccttgttaaattttaatctatagtcatgcacacttgaacatatattagcatattcaattattcttcaatacttt 12398188  T
Q  198 gttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
     ||||||||||||   |||||||||||||||||| ||||||    
T  12398189 attatcatcaaaactttagaggaattgtacaaaccaatttt 12398229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 31584201 - 31584009
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    ||||||||||| ||||| | |||||||||||||||| | | ||||| |  ||||||  ||||||||||||||| ||| ||| | |||||||| |||||||    
T  31584201 gttgacttatggttgacatttcttcagatcttctacga-agtcttttaatttctcttgtgcttctgatgctctcatatatgctcagaccttgataaattt 31584103  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacat-agaggaattgtacaaa 230  Q
    ||||||  |||| ||||||||| | ||  ||||||||||||||||| || || ||||||||||||||||| ||||||| ||||| ||||||||||    
T  31584102 taatctatggtcctgcacacttaagcacgtattaacatatccaattattcttcaatactttgttatcatc-aaaacatcagaggcattgtacaaa 31584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 17103200 - 17103028
Alignment:
Q  57 tcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacac 156  Q
    ||||| |||||||||||| | ||||| |||||||||  | ||||||||||||||||||||||| ||| |||||||||||||||| |  |||| |||| ||    
T  17103200 tcttctgatcttctacca-agtcttttagcttctcttgttcttctgatgctcttatacatgttcagaacttgttaaattttaatatatggtcctgcatac 17103102  T
Q  157 ttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
     ||| |||||||||  |||| |||||| | ||||||| ||||||||||||||||    ||||||||||||||||    
T  17103101 gtgaacatatattaggatattcaattgctctttaatattttgttatcatcaaaacttcagaggaattgtacaaa 17103028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 30805687 - 30805595
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatct 142  Q
    ||||||| |||||||||||||||||||| | ||| |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30805687 ttgacctttcttcagatcttctaccatagtgttt-agcttctcttgtgcttctcatgctcttatacatgtttagaccttgttaaattttaatct 30805595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 2973529 - 2973420
Alignment:
Q  102 gatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgtta 201  Q
    |||||||||||| || |||||| |||| ||||||||||| || |||||||||||||| | ||||||||| ||| |  |||| || |||||||||||||||    
T  2973529 gatgctcttatatatctttagagcttggtaaattttaatatttggtcatgcacacttaaacatatattagcattttaaattattctttaatactttgtta 2973430  T
Q  202 tcatcaaaaa 211  Q
    ||||||||||    
T  2973429 tcatcaaaaa 2973420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 17316244 - 17316124
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || ||||||| |||||| || || ||||| |||||| || |||||||  ||||| ||||||||||||||||||| |||||||||||    
T  17316244 aaggcgttgacttctggttgacctttcttcatattttttaccacaatctt-gaacttctcttgtgcttttgatgctcttatacatgttcagaccttgtta 17316146  T
Q  132 aattttaatcttcggtcatgca 153  Q
    ||||||||||| ||||| ||||    
T  17316145 aattttaatctacggtcctgca 17316124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 1812582 - 1812428
Alignment:
Q  85 gcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgt 184  Q
    ||||||||  ||||||  ||||||| ||| |||||||||||||| ||||||||||| |  |||||||||||||| | ||||||||| ||||| | |||||    
T  1812582 gcttctcttgtgcttcatatgctctcatatatgtttagaccttgataaattttaatttatggtcatgcacacttaaacatatattagcatattcgattgt 1812483  T
Q  185 tgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa-ctaatttt 238  Q
    | ||  |||||||||||| |||||||   |||||  |||||||||| ||||||||    
T  1812482 ttttcgatactttgttataatcaaaattttagagacattgtacaaatctaatttt 1812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 41029581 - 41029752
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||||||  |||||| |||||||||||||||  | | ||||| ||||||||| |||||| ||||| | | ||| ||||| |||||||| |||||||    
T  41029581 gttgacttatgagtgacctttcttcagatcttctat-agagtcttt-agcttctcttatgcttatgatgttatcatatatgttcagaccttgataaattt 41029678  T
Q  137 taatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||| |  | || ||||||||| | ||||||| | |||||||||||||| || | ||||||||||||| |||||    
T  41029679 taatttatgatcctgcacacttaaacatatatcagcatatccaattgttcttcattactttgttatcaacaaaa 41029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 15787482 - 15787402
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    |||||| |||| || ||||||| |||||||||||||  | ||||||||||||||||||||| | |||||||||||||||||    
T  15787482 tgcacatttgaacaaatattaatatatccaattgttcgtcaatactttgttatcatcaaaaccttagaggaattgtacaaa 15787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 10751508 - 10751592
Alignment:
Q  129 ttaaattttaatcttcggtcatgcacacttgatcatatattaacat---atccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||||||   ||| ||||||||||| ||||||||| |||   ||||||||||| ||||||||||||||||||||||||    
T  10751508 ttaaattttaatctatagtcctgcacacttgagcatatattagcatcatatccaattgttctttaatactttgttatcatcaaaa 10751592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 15440920 - 15441051
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattt 136  Q
    |||||||| || ||||||| |||||||||||||||  |  ||  || |||||||||  |||||||||||||||| || ||||| |||| ||| |||||||    
T  15440920 gttgacttctgattgacctttcttcagatcttctataa--attatttagcttctcttgtgcttctgatgctcttgtatatgttcagactttgataaattt 15441017  T
Q  137 taatcttcggtcatgcacacttgatcatatatta 170  Q
    |||| |  |||||||||||||| | |||||||||    
T  15441018 taatttatggtcatgcacacttaagcatatatta 15441051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 15650806 - 15650720
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||| ||| || |||||| ||| |||||||||| || |||||||| |||||||||||| | |||||||||||||||||| ||||||    
T  15650806 cacacctgaacaaatattagcatgtccaattgttcttcaatactttattatcatcaaaaccttagaggaattgtacaaaccaatttt 15650720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 34188104 - 34188237
Alignment:
Q  77 atctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatat 176  Q
    |||||| |||||||||  | ||||| ||||||||||| ||| | |  ||||| |||||| ||||||  |||| ||||| | | | ||||||||| |||||    
T  34188104 atcttttagcttctcttgtacttctaatgctcttatatatgatcaagccttgataaattataatctatggtcctgcacgcgtaaacatatattagcatat 34188203  T
Q  177 ccaattgttgtttaatactttgttatcatcaaaa 210  Q
     |||||||| || |||||||||||||||||||||    
T  34188204 tcaattgtttttcaatactttgttatcatcaaaa 34188237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 22666687 - 22666760
Alignment:
Q  165 atattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    |||||| ||||| |||||||| ||||||| ||| |||||||||||  | ||||| |||||||||||| ||||||    
T  22666687 atattagcatattcaattgttctttaataatttattatcatcaaatccttagagaaattgtacaaaccaatttt 22666760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 26898360 - 26898469
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||| | ||||||| ||| |||| ||||||||||||||| |  |||  |||||| |||| |||| |||| ||||||  || ||| ||||||||    
T  26898360 tgcttctgatgtttttatacacgttcagactttgttaaattttaatttatggttctgcacatttgaacatacattagcatatcatatggttctttaatac 26898459  T
Q  195 tttgttatca 204  Q
    ||||| ||||    
T  26898460 tttgtgatca 26898469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 37283122 - 37283053
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgt 118  Q
    ||||||| |||||||||||||||||  | ||||||||||||||| ||| || ||||||| | ||||||||    
T  37283122 ttgacctttcttcagatcttctacctaagtctttgagcttctcttatgtttttgatgctttaatacatgt 37283053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30498306 - 30498342
Alignment:
Q  174 tatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30498306 tatccaattgttgttcaatactttgttatcatcaaaa 30498342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 37283019 - 37282943
Alignment:
Q  153 acacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    |||||||| || ||||||| || || |||| || || |||||||||||||||||||||   ||||||||||||||||    
T  37283019 acacttgaacaaatattaatatgtctaatttttcttaaatactttgttatcatcaaaactttagaggaattgtacaa 37282943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 1090225 - 1090159
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg--ttgtttaatactttgttatcatcaaa 209  Q
    |||||||||||||||| || |||||| ||||||||||||   | |||||||| ||||||||||||||    
T  1090225 ggtcatgcacacttgaacaaatattagcatatccaattgacatttttaataccttgttatcatcaaa 1090159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 19018836 - 19018745
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    |||||||||||||| || ||||||  |||| |||||| | || |||||||| ||||||||||||   ||| |||||||| ||||| ||||||    
T  19018836 tcatgcacacttgaacaaatattagtatattcaattgctcttcaatactttattatcatcaaaactttagtggaattgtgcaaaccaatttt 19018745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 35896470 - 35896529
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgttt-aatactttgttatcatcaaaa 210  Q
    ||||||||| |||| |||||||||| |||||||| ||| |||||||| ||||||||||||    
T  35896470 cacacttgaacatacattaacatattcaattgttcttttaatactttcttatcatcaaaa 35896529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 12668768 - 12668682
Alignment:
Q  152 cacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||| || |||||| |||||  ||| | | || |||| ||||||||||| |||| | |||||||||||||||||| ||||||    
T  12668768 cacacttgaacaaatattagcatattaaatcgatcttcaataatttgttatcattaaaaccttagaggaattgtacaaaccaatttt 12668682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 17496368 - 17496286
Alignment:
Q  156 cttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||| || ||||||  ||||||||||||| || ||||||||||||| |||||||   ||||| ||||| |||||| ||||||    
T  17496368 cttgaacaaatattagtatatccaattgttcttcaatactttgttattatcaaaacattagagaaattgcacaaaccaatttt 17496286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 2819038 - 2818977
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaatt-gttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||||||||||||||| |   ||||||| ||||||||||||||||    
T  2819038 tgcacacttgaacaaatattaacatatccaattggacttttaatattttgttatcatcaaaa 2818977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 22049591 - 22049636
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatcttt 82  Q
    |||||| |||| ||||||| |||||||||||||||||||| |||||    
T  22049591 gttgacatatggttgacctttcttcagatcttctaccatagtcttt 22049636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 43282252 - 43282136
Alignment:
Q  86 cttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt 185  Q
    |||||||  |||||| |||||||||||| ||| | | | |||| ||| ||||||||   |||| ||||||||| | ||||||||| |||| |||||||||    
T  43282252 cttctcttgtgcttcagatgctcttatatatgctcaaaacttgataagttttaatccatggtc-tgcacacttaaacatatattatcatacccaattgtt 43282154  T
Q  186 gtttaatactttgttatc 203  Q
     || |||| |||||||||    
T  43282153 cttcaatattttgttatc 43282136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 10814563 - 10814388
Alignment:
Q  65 tcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttc--ggtcatgcacacttgatc 162  Q
    |||||||||||| |||||||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||||||    |||| | ||||||| | |    
T  10814563 tcttctaccatagtctttgagcttctcttttacttttgatgctcttatacatgttcagaccttgttaaattttaatctatatggtcctacacacttaaac 10814464  T
Q  163 atatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
     ||||||| |||||||||||||| |||||| |||||||| |||||||| | |||||||||||||||||| ||||||    
T  10814463 gtatattagcatatccaattgttctttaattctttgttaccatcaaaaccttagaggaattgtacaaaccaatttt 10814388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 22562559 - 22562386
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctctt-atacatgtttagaccttgttaaat 134  Q
    |||||||||  | ||||||  |||||||||||||||||||| |||||||||||||||  || || |||||||||| ||||||||| ||||||| ||||||    
T  22562559 agttgacttcggtttgaccattcttcagatcttctaccatagtctttgagcttctcttgtgtttatgatgctctttatacatgttcagacctttttaaat 22562460  T
Q  135 tttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaa 208  Q
    ||||||||   ||| ||||||||||| ||||||||  ||||||||||| || |||||||||||||||| |||||    
T  22562459 tttaatctatagtcctgcacacttgaacatatattcgcatatccaatttttctttaatactttgttataatcaa 22562386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 4312650 - 4312856
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgtta 131  Q
    |||| |||||||| || ||||||| |||||||||||||||||||| ||||| |||||||    |  || | ||||||||||||||||| | | |||||||    
T  4312650 aaggtgttgacttttgattgacctttcttcagatcttctaccatagtctttcagcttcttgtgtattttttatgctcttatacatgttcaaaacttgtta 4312749  T
Q  132 aattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||| |  |||||||||||||||| ||| |||||  ||||||||||||| ||||||  |||||| |||||||||   ||||| ||||||||||||    
T  4312750 aattttaatatatggtcatgcacacttgaacatgtattagaatatccaattgttatttaatgttttgttgtcatcaaaactttagagaaattgtacaaac 4312849  T
Q  232 taatttt 238  Q
     ||||||    
T  4312850 caatttt 4312856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 29032325 - 29032440
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||  | || ||||| || ||  |||||||| ||||| |||||||| ||||||||    
T  29032325 tgcttctgatgctcttatacatgttcaggccttgttcaattttaatctaagatcctgcactctagaatatatattagcatattcaattgttctttaatac 29032424  T
Q  195 tttgttatcatcaaaa 210  Q
    ||||||||||||||||    
T  29032425 tttgttatcatcaaaa 29032440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 11703872 - 11703736
Alignment:
Q  103 atgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac-tttgtta 201  Q
    ||||||||||||||||| | |  |||||||||||||||||  | |||||||||||| | ||||||||| ||| | |||||||| | |||||| |||||||    
T  11703872 atgctcttatacatgttcaaatattgttaaattttaatctatgatcatgcacacttaaacatatattagcatttacaattgttctataatacttttgtta 11703773  T
Q  202 tcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    |||||||||   ||||| |||||||||||||||||||    
T  11703772 tcatcaaaactttagagcaattgtacaaactaatttt 11703736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 21747375 - 21747487
Alignment:
Q  96 gcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatact 195  Q
    ||||||||||||||| ||||| || |||||||||||||||||| | |  |||| ||||  ||||||||||||||| ||||||||||| || |||||||||    
T  21747375 gcttctgatgctcttttacattttcagaccttgttaaattttagtatatggtcctgcatccttgatcatatattagcatatccaatttttctttaatact 21747474  T
Q  196 ttgttatcatcaa 208  Q
    ||||||| |||||    
T  21747475 ttgttattatcaa 21747487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 26238936 - 26239051
Alignment:
Q  95 tgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatac 194  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||| |  |||||||||  ||| |  |||||||| |||||||||||||| || |||||    
T  26238936 tgcttctgatgcttttatatatgtttagaccttaataaattttaatttatggtcatgcatgcttaaaaatatattagcatatccaattgttcttcaatac 26239035  T
Q  195 tttgttatcatcaaaa 210  Q
    ||||||||||||||||    
T  26239036 tttgttatcatcaaaa 26239051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 17146360 - 17146200
Alignment:
Q  50 tgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtca 149  Q
    |||||| |||||| ||||||||||  | | ||| |||||||||  |||||||||| |||||||  ||||| | |||||||||||||||||| |  | ||     
T  17146360 tgacctttcttcatatcttctaccg-agtattttagcttctcttgtgcttctgatactcttatctatgttcaaaccttgttaaattttaatatatgatcc 17146262  T
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaa 211  Q
    ||||||||| |  |||||||| ||||| |||||||| |||| |||||||||||||| |||||    
T  17146261 tgcacacttaaatatatattagcatatacaattgttctttagtactttgttatcataaaaaa 17146200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 17291798 - 17291959
Alignment:
Q  49 ttgacctatcttcagatcttctaccataatctttg-agcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggt 147  Q
    ||||||| |||||| ||||||||||| | |||||  ||||||||| |||||| || |||| | ||| ||||| |||| |||||||||||||||||  | |    
T  17291798 ttgacctttcttcaaatcttctacca-agtctttttagcttctcttatgcttttgttgctatcatatatgttcagactttgttaaattttaatctatgat 17291896  T
Q  148 catgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    | | ||||||| | ||||||||| ||||| ||||| || ||||| | ||||||||||||||||    
T  17291897 cttacacacttaaacatatattagcatattcaattattctttaagattttgttatcatcaaaa 17291959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 10821477 - 10821558
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||||||||| || ||||||| ||||| ||||||| || ||||||||||||||||||||| | || || ||||||||||||    
T  10821477 tgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatcatcaaaaccttatagtaattgtacaaac 10821558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 12394827 - 12394908
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||  |||| ||||||||||| || ||||||||||||| ||||| |  ||||||||||||||||||||||||    
T  12394827 taaattttagtctatggtcctgcacacttgaacaaatattaacatatctaattgatcatttaatactttgttatcatcaaaa 12394908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 24576133 - 24576230
Alignment:
Q  132 aattttaatcttcggtcatgcacacttgatcatatat--taacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtac 227  Q
    ||||||| |||  ||||||||||| ||||  ||||||  || |||||||||||||| || |||||||||||||||||||||   |||||| |||||||    
T  24576133 aattttagtctatggtcatgcacatttgaatatatatactagcatatccaattgttcttgaatactttgttatcatcaaaactctagaggtattgtac 24576230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 30701166 - 30701121
Alignment:
Q  165 atattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||    
T  30701166 atattagcatatccaattgttcttttatactttgttatcatcaaaa 30701121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 6560646 - 6560522
Alignment:
Q  86 cttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt 185  Q
    |||||||  ||||| ||||||||||||| ||||| |||||||| |||||| |||| |  |||  |||| |||| | ||||||||| ||||| | ||| ||    
T  6560646 cttctcttgtgcttttgatgctcttatatatgttcagaccttgataaattgtaatttatggttctgcaaacttaaacatatattaccatattcgattttt 6560547  T
Q  186 gtttaatactttgttatcatcaaaa 210  Q
     || |  ||||||||||||||||||    
T  6560546 cttcatcactttgttatcatcaaaa 6560522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 27124700 - 27124759
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||||||||| |||  ||| ||||||||| || |||||||||||||||||||||    
T  27124700 tgcacacttgatcatatgttagtata-ccaattgttcttcaatactttgttatcatcaaaa 27124759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 18615000 - 18614922
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    ||||||||||| || ||||||  ||||   |||||| || ||||||||||||||||| ||||| ||||||||||||||||    
T  18615000 tgcacacttgaacaaatattagtatattacattgttcttcaatactttgttatcatc-aaaacctagaggaattgtacaa 18614922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 10482486 - 10482536
Alignment:
Q  176 tccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||||| || |||||||||||||| |||||| | |||||||||||||    
T  10482486 tccaattgtttttcaatactttgttatcttcaaaatcttagaggaattgta 10482536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 14272294 - 14272332
Alignment:
Q  190 aatactttgttatcatcaaaaacatagaggaattgtaca 228  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  14272294 aatactttgttatcatcaaaatcttagaggaattgtaca 14272332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 14315316 - 14315250
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgttt-aatactttgttatcatcaaaa 210  Q
    ||||||||| |||||| || |||||| ||||| |||||||| ||| |||| ||||||||||||||||    
T  14315316 ggtcatgcaaacttgaacacatattagcatattcaattgttttttcaatagtttgttatcatcaaaa 14315250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 16877613 - 16877680
Alignment:
Q  147 tcatgcacacttgatcatatattaacatatccaattg----ttgtttaatactttgttatcatcaaaa 210  Q
    ||||| |||||||| || |||||| ||||||||||||    || ||||||||||||||||||||||||    
T  16877613 tcatgtacacttgaacaaatattagcatatccaattgacaattttttaatactttgttatcatcaaaa 16877680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 19134132 - 19134182
Alignment:
Q  176 tccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgta 226  Q
    |||||||||| || ||||||||| ||||||||||| | |||||||||||||    
T  19134132 tccaattgttcttcaatactttgatatcatcaaaatcctagaggaattgta 19134182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 31127149 - 31127068
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| ||| ||||| ||||||||||| || ||| || |||||| |||||  | |||||||| |||||||||||||||    
T  31127149 taaattttagtctacggtcctgcacacttgaacaaatactagcatatcgaattgactttttaataccttgttatcatcaaaa 31127068  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 15477583 - 15477523
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||| ||||| ||||||   |||||||| |||||||||||||||    
T  15477583 tgcacacttgaacaaatattagcatattcaattgaattttaataccttgttatcatcaaaa 15477523  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 24718511 - 24718444
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattg--ttgtttaatactttgttatcatcaaaa 210  Q
    |||| |||||||||||  | |||||||||||||||||||  || |||||||| || ||||||||||||    
T  24718511 ggtcttgcacacttgaagaaatattaacatatccaattgacttttttaataccttattatcatcaaaa 24718444  T

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Target: scaffold0804 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 187 - 63
Alignment:
Q  86 cttctctcatgcttctgatgctcttatacatgtttagaccttgttaaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattgtt 185  Q
    |||||||  |||||||| |||| |||||||| |||||||||||||||||||||||||  | || ||||| ||||| |||||||||||||||| |||||||    
T  187 cttctctggtgcttctggtgcttttatacatatttagaccttgttaaattttaatctaagatcctgcactcttgaacatatattaacatatctaattgtt 88  T
Q  186 gtttaatactttgttatcatcaaaa 210  Q
     ||||||||||||||||||||||||    
T  87 ctttaatactttgttatcatcaaaa 63  T

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Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 319241 - 319069
Alignment:
Q  36 agttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctcttatacatgtttagaccttgttaaatt 135  Q
    ||||||||| || ||||||| ||||||||| |||||||| | ||||| ||||||| | ||||||| |||||||| ||| ||| | ||| |||   |||||    
T  319241 agttgacttctggttgacctttcttcagatgttctacca-agtcttt-agcttcttttatgcttcagatgctctcatatatggtcagaacttagcaaatt 319144  T
Q  136 ttaatcttcggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaa 210  Q
    ||||| |  | || ||||||||||| || ||||||||||||| ||||||| || |||||||||||||||||||||    
T  319143 ttaatttatgatcctgcacacttgaacacatattaacatatctaattgtttttcaatactttgttatcatcaaaa 319069  T

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Target: scaffold0161 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 5467 - 5554
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaactaatttt 238  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||   |||||||||||||||| | ||||||    
T  5467 tgcacacttgaacatatattaacatatgcaattgtt-tttaatactttgttatcatcaaaactctagaggaattgtacaacccaatttt 5554  T

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Target: scaffold0650 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 6194 - 6272
Alignment:
Q  32 aaggagttgacttatgcttgacctatcttcagatcttctaccataatctttgagcttctctcatgcttctgatgctctt 110  Q
    |||| |||||||| || ||||||| || ||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  6194 aaggtgttgacttctggttgacctttcatcagatcttctaccatagtctttgagcttctcttgtgcttctgatgctctt 6272  T

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Target: scaffold0329 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 4674 - 4759
Alignment:
Q  145 ggtcatgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaa 230  Q
    |||| |||||||||||  |||||||| |||||||||||||| |||| ||| ||| |||||||||||   |||||| ||||||||||    
T  4674 ggtcctgcacacttgaaaatatattagcatatccaattgttttttactaccttgatatcatcaaaactttagaggtattgtacaaa 4759  T

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Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 28300 - 28381
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattgttgtttaatactttgttatcatcaaaaacatagaggaattgtacaaac 231  Q
    ||||| ||||| || ||||||  ||||||||||| | || |||| |||||||||||||||| | ||||||||||||||||||    
T  28300 tgcactcttgaacaaatattagtatatccaattgatcttcaatattttgttatcatcaaaaccttagaggaattgtacaaac 28381  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 105438 - 105355
Alignment:
Q  37 gttgacttatgcttgacctatcttcagatcttctaccataatc-tttgagcttctctcatgcttctgatgctcttatacatgtt 119  Q
    ||||||| ||| ||||||| |||||||||||||||||||| || |||||||||||||  || ||||||| || | |||||||||    
T  105438 gttgactcatggttgacctttcttcagatcttctaccatagtcgtttgagcttctcttgtgtttctgatcctttaatacatgtt 105355  T

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Target: scaffold0758 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 4626 - 4707
Alignment:
Q  130 taaattttaatcttcggtcatgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||| |||  |||| ||||||||||| || |||||| ||||||||||||  | |||||||| |||||||||||||||    
T  4626 taaattttagtctatggtcctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaa 4707  T

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Target: scaffold0754 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 4950 - 4988
Alignment:
Q  191 atactttgttatcatcaaaaacatagaggaattgtacaa 229  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  4950 atactttgttatcatcaaaaccttagaggaattgtacaa 4988  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 32017 - 32078
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||| ||||||||||||  | |||||||| |||||||||||||||    
T  32017 tgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaa 32078  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 112582 - 112643
Alignment:
Q  150 tgcacacttgatcatatattaacatatccaattg-ttgtttaatactttgttatcatcaaaa 210  Q
    ||||||||||| || |||||| ||||||||||||  | |||||||| |||||||||||||||    
T  112582 tgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaa 112643  T

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