View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_low_25 (Length: 234)
Name: NF2286_low_25
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 36960378 - 36960176
Alignment:
| Q |
15 |
aaaggaaaaaatacagattaaaaaa-ttcaatcaaactattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgag |
113 |
Q |
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| T |
36960378 |
aaaggaaaaaatacagattaaaaaaattcaatcaaactattatttatgtagaagtgcagcggatggagatacgacttcaaaggctgtgcttgattgtgag |
36960279 |
T |
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| Q |
114 |
gaccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtat |
213 |
Q |
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| T |
36960278 |
gaccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtat |
36960179 |
T |
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| Q |
214 |
tat |
216 |
Q |
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| T |
36960178 |
tat |
36960176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 36950236 - 36950042
Alignment:
| Q |
23 |
aaatacagatt-aaaaaattcaatcaaactattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgt |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36950236 |
aaatacagattcaaaaaattcaatcaaactattatttatgtagcagtgcagccgatggagatatgacttcaaaggctgtgcttgattgtgaggaccctgt |
36950137 |
T |
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| Q |
122 |
gatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattat |
216 |
Q |
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| T |
36950136 |
gatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattat |
36950042 |
T |
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