View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_low_3 (Length: 410)
Name: NF2286_low_3
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 33902325 - 33901938
Alignment:
| Q |
6 |
agcagcacagataagcaatctcttacaacccaacttccccaaatccggatcattagccgggttaatcaacgggtcatccgatccattcgtagttggacat |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33902325 |
agcaacacaaataagcaatctcttacaacccaacttccccaaatccggatcattagccgggttaatcaacgggtcatccgatccattcgtagttggacat |
33902226 |
T |
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| Q |
106 |
gcaaaacgccataaattatgaatcttttcaatatattcagcttgtttcagttctgatccaatccgatccacgccccaaaaataaggatgaatataaaaac |
205 |
Q |
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| T |
33902225 |
gcaaaacgccataaattatgaatcttttcaatatattcagcttgtttcagttctgatccaatccgatccacaccccaaaaataaggatgaatataaaaac |
33902126 |
T |
|
| Q |
206 |
tcccttcaagttttacaccatccaaattttccttcccgacctgaatacttaaatggtgtgcaatattagccccagcactatcacctcctaagaaaacttt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33902125 |
tcccttcaagttttacaccatccaaattttccttcccgacccgaatacttaaatggtgtgcaatattagccccagcactatcacctcctaagaaaacttt |
33902026 |
T |
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| Q |
306 |
ctcaaaatctgcatattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgcaagccatgaatct |
393 |
Q |
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| T |
33902025 |
ctcaaaatctgcatattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgcaagccatgaatct |
33901938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 33896538 - 33896912
Alignment:
| Q |
18 |
aagcaatctcttacaacccaacttccccaaatccggatcattagccgggttaatcaacgggtcatccgatccattcgtagttggacatgcaaaacgccat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
33896538 |
aagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtcatccgatccagtcgtagttggacatgaaaaacgccac |
33896637 |
T |
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| Q |
118 |
aaattatgaatcttttcaatatattcagct-tgtttcagttctgatccaatccgatccacgccccaaaaataaggatgaatataaaaactcccttcaagt |
216 |
Q |
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||||||||||||||||| | | ||||||| | ||| | ||| || ||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||| |
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| T |
33896638 |
aaattatgaatcttttctacaaattcagccatatttga-ttcagaaccaattagatccacaccccaaaaataaggatgtatataaacactcccttcaagt |
33896736 |
T |
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| Q |
217 |
tttacaccatccaaattttccttcccgacctgaatacttaaatggtgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatctg |
316 |
Q |
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| T |
33896737 |
ttcacaccatctaaattttccttcccaacccgaatacccaaatagtgtgaaatattagcaccagcactatcacctcctaagaacactttctcaaaatctg |
33896836 |
T |
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| Q |
317 |
catattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgcaagccatgaatc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33896837 |
catattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgctagccatgaatc |
33896912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 17473420 - 17473368
Alignment:
| Q |
262 |
tgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatc |
314 |
Q |
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|||||||||||||| |||||||||||||| || | |||||| || |||||||| |
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| T |
17473420 |
tgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaaatc |
17473368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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