View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2286_low_4 (Length: 402)
Name: NF2286_low_4
Description: NF2286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2286_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 391
Target Start/End: Original strand, 32139003 - 32139392
Alignment:
| Q |
2 |
aacaaacaccacagtcgtcggatttggcaagggagcattgggcagagcgacaccgtgcagggcggtatgtggaggaaatgtactggttttcgcaatcaac |
101 |
Q |
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| T |
32139003 |
aacaatcaccacagccgtcggaatttgcaagggagcattgggctgaacggcagcgtgcagggcggtatgtggaagaaatgtatttgttttcgcagtcaac |
32139102 |
T |
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| Q |
102 |
ccagagaaacaggccaccgagatcgacaatgacgttcagtggaactagtggtgttctttggttgatttgagctttgtattggtttgttgtggccccatct |
201 |
Q |
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| T |
32139103 |
ccaaagaaactggccaccgagatcgacgatgacgttcagtgggactaatggggttctctggttgatttgagctttgtattggtttgttgtggccccatct |
32139202 |
T |
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| Q |
202 |
tttgtgactgggagaacaagggcttttggcctgaaagattgttgagagaaagttggtgtaatgaagaaaaataggagaaggattgtaatgaagtgttgaa |
301 |
Q |
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| T |
32139203 |
tttgtgattgggagaacaagggcttttggcctgaaagattgttgagagaaagtgggtgaaatgaagaaaaataggagaaggattgtaatgaagtgttgaa |
32139302 |
T |
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| Q |
302 |
aattggaattagccatggcttgagtgtaaagatgtaaatgatattgagtttgtgaagatggtgttgaggcaggtctatttatattatatt |
391 |
Q |
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| T |
32139303 |
aattggaattagccatggctagagtgtaaagatgtaaatgatattgagtttgtgaagatggtgttgaggcaggtctatttatattatatt |
32139392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 32148393 - 32148786
Alignment:
| Q |
2 |
aacaaacaccacagtcgtcggatttggcaagggagcattgggcagagcgacaccgtgcagggcggtatgtggaggaaatgtactggttttcgcaatcaac |
101 |
Q |
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| T |
32148393 |
aacaaacaccacagtcgtcgaatttggcaagggagcattgggcagagcgacaccgtgcaggacggtatgtggaggaaatgtactggttttcgcaatcaac |
32148492 |
T |
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| Q |
102 |
ccagagaaacaggccaccgagatcgacaatgacgttcagtggaactagtggtgttctttggttgatttgagctttgtattggtttgttgtggccccatct |
201 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
32148493 |
ccagagaaacaggccaccgagatcgacgatgatgttcagtgggactagtggtgttctttggttgatttgagctttgtattggtttgtggtagcgacatct |
32148592 |
T |
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| Q |
202 |
tttgtgactgggagaacaagggcttttggcctgaaagattgttgagagaaagttggtgtaatgaagaaaaataggagaaggattgtaatgaagtgttgaa |
301 |
Q |
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| T |
32148593 |
tttgtgactgggagaactagggcttttggcctgaaagattgtttagagaaagtgggtgaaatgaagaaaaataggaggagggttgtaatgaagtgttgga |
32148692 |
T |
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| Q |
302 |
aattggaattagccatggcttgagtgtaaagat---------gtaaatgatattgagtttgtgaagatggtgttgaggcaggtctatttatatt |
386 |
Q |
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| T |
32148693 |
aattgtatttagccatggcttgagagtaaaaatagtgtattagtgtatggtattgagtttgagaagatggtgttgaggcatctctatttatatt |
32148786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 32127237 - 32127534
Alignment:
| Q |
22 |
gatttggcaagggagcattgggcagagcgacaccgtgcagggcggtatgtggaggaaatgtactggttttcgcaatcaacccagagaaacaggccaccga |
121 |
Q |
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| T |
32127237 |
gatttggcgagggagcattgggcggaggggcaccgtacagggcggtatgtggaggaagtgtagtggttttcacagtcgacccagagaaatttgccgccaa |
32127336 |
T |
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| Q |
122 |
gatcgacaatgacgttcagtggaactagtggtgttctttggttgatttgagctttgtattggtttgttgtggccccatcttttgtgactggg-agaacaa |
220 |
Q |
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| T |
32127337 |
gatcaacgacaaggtttagtgggactagtggggttctttggttaatttgagctatgtattggagtgttgttgcgctatcttttgtgactggggagaacaa |
32127436 |
T |
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| Q |
221 |
gggcttttggcctgaaagattgttgagagaaagttggtgtaatgaagaaaaataggagaaggattgtaatgaagtgttgaaaattggaattagccatg |
318 |
Q |
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| T |
32127437 |
gtgctttgggtctgaatgattgttgagagaaagttggtgtaatgaagaacaataaaaggagaagggaaatgaagtgttggaagttggtattagccatg |
32127534 |
T |
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