View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2287_high_10 (Length: 221)
Name: NF2287_high_10
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2287_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 2929180 - 2928994
Alignment:
| Q |
17 |
caaagggctttgaagaatacaaacaaaggtttgaaggacgtacaatgcctccaacccatcaagaaagtgtaaggcttacaaagattctcaacaatattat |
116 |
Q |
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| T |
2929180 |
caaagggctttgaagaatacaaacaaaggtttgaaggacgtacaatgcctccaacccatcaagaaagtgtaaggcttacaaagattctcaataatattat |
2929081 |
T |
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| Q |
117 |
tgatgcattgctgagagagagaaacaaaatgagccatgaatctgagtgtaccatttcacatttggatggattaaattgggaggtttt |
203 |
Q |
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| T |
2929080 |
tgatgcattgctgagagagagaaacaaaatgagccatgaatctgagtgtaccatttcacatttggatggattaaattgggaggtttt |
2928994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 2309867 - 2310042
Alignment:
| Q |
20 |
agggctttgaagaatacaaacaaaggtttgaaggacgtacaatgcctccaacccatcaagaaagtgtaaggcttacaaagattctcaacaatattattga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
2309867 |
agggctttgaagaatacaaacaaaggtttgaaggacgtacaatgcctcaaacctatcaagaaagtgtaaggcatacaaagattctcaataatataattga |
2309966 |
T |
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| Q |
120 |
tgcattgctgagagagagaaacaaaatgagccatgaatctgagtgtaccatttcacatttggatggattaaattgggaggtt |
201 |
Q |
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| T |
2309967 |
tgcattgcaaagagaaagaaagaaaatgagccctgaatc------taatatgtcacatttggatggattaaattgggaggtt |
2310042 |
T |
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