View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2287_high_3 (Length: 375)
Name: NF2287_high_3
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2287_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 14222662 - 14222310
Alignment:
| Q |
16 |
aaaatctaatttaaaacattgaccaatctacttctttcataaatggcagaggtgtatatgctgcatatttaagccaattcaacaagctttgctcatttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222662 |
aaaatctaatttaaaacattgaccaatctacttctttcataaatggcagaggtgtatatgctgcatatttaagccaattcaacaagctttgctcatttcc |
14222563 |
T |
|
| Q |
116 |
cagtccttgtaatgctacaaacatttccctcgcaggcttaaacaacatcagttgacaacatcgggaatgccaatcaagatcgattccaatgacctctatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14222562 |
cagtccttgtaatgctacaaacatttccctcgcaggcttaaacaacatcagttgacaacatcgggaatgccaatcaagatcgatcccaatgacctctatg |
14222463 |
T |
|
| Q |
216 |
caattaagctcagcgatcacttcaggaatagatgtcccaggtactatcagtgccttcatagcagctgtgcgcgactcacacacggatgcaattctactca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222462 |
caattaagctcagcgatcacttcaggaatagatgtcgcaggtactatcagtgccttcatagcagctgtgcgcgactcacacacggatgcaattctactca |
14222363 |
T |
|
| Q |
316 |
atgcatcagctatcctttctgcatcagaaaccttgatatttttcttcttctca |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14222362 |
atgcatcagctatcctttctgcatcagaaaccttgatattttttttcttctca |
14222310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University