View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_high_4 (Length: 347)

Name: NF2287_high_4
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2287_high_4
NF2287_high_4
[»] chr1 (8 HSPs)
chr1 (232-329)||(27995215-27995312)
chr1 (232-299)||(27994619-27994686)
chr1 (245-305)||(28005017-28005077)
chr1 (245-305)||(28005325-28005385)
chr1 (238-301)||(28004356-28004419)
chr1 (255-305)||(28004689-28004739)
chr1 (253-317)||(27994929-27994994)
chr1 (288-317)||(27995564-27995593)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 27995312 - 27995215
Alignment:
Q  232 aggggaagacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtactgcgctaacgggctaaatgcaaac 329  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  27995312 aggggaagacaggctatatattgttgtatatttttacgataagtatttactttcttgatatttgaaatatgtactgcgctaacgggcaaaatgcaaac 27995215  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 27994686 - 27994619
Alignment:
Q  232 aggggaagacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaat 299  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||   ||||||||||||||    
T  27994686 aggggcagacagactatatattgttgtatatttttacgataagtattcactactttggtatttgaaat 27994619  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28005077 - 28005017
Alignment:
Q  245 ctatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    |||| |||| |||||||||||||||||||||||| ||| |||||| |||| ||||||||||    
T  28005077 ctatgtattgttgtatatttttacgataagtattcactgtcttggaatttaaaatatgtac 28005017  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28005385 - 28005325
Alignment:
Q  245 ctatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    ||||||||| ||||||||||||| |||||||||| ||  |||||| |||||||||||||||    
T  28005385 ctatatattgttgtatatttttatgataagtattcaccgtcttgggatttgaaatatgtac 28005325  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 28004419 - 28004356
Alignment:
Q  238 agacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaatat 301  Q
    |||||| || |||||  |||||||||||||| ||||||||| |||  |||||||||||||||||    
T  28004419 agacaggctgtatatagttgtatatttttacaataagtattcactaccttggtatttgaaatat 28004356  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 28004739 - 28004689
Alignment:
Q  255 ttgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    ||||||| |||||||||||||||| ||| |||| | |||||||||||||||    
T  28004739 ttgtatacttttacgataagtattcactatcttaggatttgaaatatgtac 28004689  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 27994994 - 27994929
Alignment:
Q  253 tattgtatat-ttttacgataagtatttactttcttggtatttgaaatatgtactgcgctaacggg 317  Q
    |||||||||| |||||| |||| |||| | | ||| |||||||||||||||||| |||||||||||    
T  27994994 tattgtatatgttttacaataattattcattgtctcggtatttgaaatatgtacagcgctaacggg 27994929  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 27995593 - 27995564
Alignment:
Q  288 ggtatttgaaatatgtactgcgctaacggg 317  Q
    ||||||||||||||||||||||||||||||    
T  27995593 ggtatttgaaatatgtactgcgctaacggg 27995564  T

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