View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_high_6 (Length: 249)

Name: NF2287_high_6
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2287_high_6
NF2287_high_6
[»] chr1 (22 HSPs)
chr1 (95-210)||(27998092-27998207)
chr1 (78-136)||(24009810-24009868)
chr1 (1-45)||(27995811-27995855)
chr1 (78-151)||(34850319-34850392)
chr1 (78-133)||(6367663-6367718)
chr1 (78-136)||(4960641-4960699)
chr1 (78-124)||(32917361-32917407)
chr1 (78-136)||(37578461-37578519)
chr1 (78-136)||(40210639-40210697)
chr1 (139-184)||(25065074-25065119)
chr1 (78-133)||(13914339-13914394)
chr1 (79-138)||(27999118-27999177)
chr1 (78-136)||(14879072-14879130)
chr1 (78-124)||(17662131-17662177)
chr1 (78-136)||(41098834-41098892)
chr1 (78-124)||(42248574-42248620)
chr1 (78-136)||(43758923-43758981)
chr1 (78-136)||(44523405-44523463)
chr1 (78-123)||(21444695-21444740)
chr1 (78-123)||(22103788-22103833)
chr1 (78-114)||(10304024-10304060)
chr1 (81-121)||(25065037-25065077)
[»] chr7 (11 HSPs)
chr7 (139-239)||(38643691-38643791)
chr7 (78-136)||(24388920-24388978)
chr7 (78-136)||(28469277-28469335)
chr7 (78-136)||(40379870-40379928)
chr7 (131-215)||(40397576-40397659)
chr7 (78-134)||(42019868-42019924)
chr7 (78-133)||(3914239-3914294)
chr7 (78-133)||(42731520-42731575)
chr7 (78-136)||(10935895-10935953)
chr7 (78-124)||(32053424-32053470)
chr7 (78-136)||(37656953-37657011)
[»] chr4 (13 HSPs)
chr4 (78-133)||(53129778-53129833)
chr4 (78-136)||(14801837-14801895)
chr4 (78-177)||(48528573-48528672)
chr4 (78-136)||(16605703-16605761)
chr4 (78-124)||(34765661-34765707)
chr4 (78-136)||(35028267-35028325)
chr4 (78-134)||(53701913-53701969)
chr4 (78-136)||(15507942-15508000)
chr4 (78-124)||(17356203-17356249)
chr4 (78-122)||(24349775-24349819)
chr4 (78-118)||(41583518-41583558)
chr4 (78-114)||(44967329-44967365)
chr4 (78-138)||(52298127-52298187)
[»] chr3 (8 HSPs)
chr3 (78-133)||(23458251-23458306)
chr3 (78-124)||(41988063-41988109)
chr3 (78-136)||(33156263-33156321)
chr3 (78-136)||(33689648-33689706)
chr3 (78-136)||(40758245-40758303)
chr3 (78-136)||(9294227-9294285)
chr3 (78-124)||(26463879-26463925)
chr3 (78-118)||(51994173-51994213)
[»] scaffold0005 (1 HSPs)
scaffold0005 (78-136)||(37832-37890)
[»] chr8 (11 HSPs)
chr8 (78-136)||(13186161-13186219)
chr8 (78-136)||(16388795-16388853)
chr8 (78-133)||(36928577-36928632)
chr8 (78-124)||(31608794-31608840)
chr8 (78-136)||(35756683-35756741)
chr8 (78-136)||(40318233-40318291)
chr8 (78-133)||(36186339-36186394)
chr8 (78-124)||(39071777-39071823)
chr8 (90-123)||(11291193-11291226)
chr8 (78-114)||(38862719-38862755)
chr8 (78-114)||(38955804-38955840)
[»] chr5 (16 HSPs)
chr5 (78-136)||(13962965-13963023)
chr5 (78-124)||(35512249-35512295)
chr5 (78-136)||(38442169-38442227)
chr5 (78-133)||(32242343-32242398)
chr5 (78-124)||(5024299-5024345)
chr5 (78-133)||(5993990-5994045)
chr5 (78-136)||(11047538-11047596)
chr5 (78-136)||(13362497-13362555)
chr5 (78-136)||(14194692-14194750)
chr5 (78-136)||(19892577-19892635)
chr5 (78-136)||(27937288-27937346)
chr5 (78-136)||(39453401-39453459)
chr5 (78-123)||(20840634-20840679)
chr5 (101-138)||(40150081-40150118)
chr5 (80-136)||(18247187-18247243)
chr5 (78-114)||(38475290-38475326)
[»] scaffold0347 (2 HSPs)
scaffold0347 (139-184)||(13750-13795)
scaffold0347 (81-135)||(14535-14589)
[»] chr2 (7 HSPs)
chr2 (78-133)||(37895619-37895674)
chr2 (78-124)||(15848189-15848235)
chr2 (79-133)||(34447914-34447968)
chr2 (78-136)||(36382262-36382320)
chr2 (78-136)||(39423616-39423674)
chr2 (78-133)||(44714033-44714088)
chr2 (78-123)||(11689642-11689687)
[»] scaffold0031 (1 HSPs)
scaffold0031 (78-124)||(69066-69112)
[»] chr6 (9 HSPs)
chr6 (78-136)||(3059358-3059416)
chr6 (78-136)||(21627982-21628040)
chr6 (78-136)||(30803962-30804020)
chr6 (78-136)||(33517635-33517693)
chr6 (78-123)||(33648747-33648792)
chr6 (78-124)||(12080737-12080783)
chr6 (78-136)||(30725860-30725918)
chr6 (78-136)||(33647064-33647122)
chr6 (78-123)||(1215148-1215193)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 27998092 - 27998207
Alignment:
Q  95 ctcacgtaatcactgccacatcactaatttactgacgtggcagtctaagtcagcaaattaggggttgtgctgacaaaaataccattggcttgttcagacc 194  Q
    |||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27998092 ctcaagtaatcactgccacgtcactaatttgctgacatggcagtctaagtcagcaaattaggggttgtgctgacaaaaatacccttggcttgttcagacc 27998191  T
Q  195 aatgaacaatgacaaa 210  Q
    ||||||||||||||||    
T  27998192 aatgaacaatgacaaa 27998207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 24009868 - 24009810
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||    
T  24009868 aaaatttcgtccctctccccacttaatcactgccacatcactaatttgatgacgtggca 24009810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27995811 - 27995855
Alignment:
Q  1 cagtgaacactcaatttggttattgaaattgtagaattgtatcaa 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  27995811 cagtgaacacttaatttggttattgaaattgtagaattgtatcaa 27995855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 34850392 - 34850319
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggcagtctaagtcagcaaa 151  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||| |||  ||||||||||||||||| ||| ||||    
T  34850392 aaaatttcatccctctccccacttaatcactgccacgtcactgattagctgacgtggcagtctaactcaacaaa 34850319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 6367663 - 6367718
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  6367663 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtg 6367718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 4960641 - 4960699
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||| | ||| ||||||||||||| ||||||||||  ||||||||||    
T  4960641 aaaatttcgtccctcttcccacttaatcactgccacgtcactaatttgatgacgtggca 4960699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 32917361 - 32917407
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  32917361 aaaatttcgtctctctccccacttaatcactgccacatcactaattt 32917407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 37578519 - 37578461
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  37578519 aaaatttcgtcactctccccacttaatcactgccacgtcactaatttgatgacgtggca 37578461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 40210697 - 40210639
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||| ||  ||||||||||    
T  40210697 aaaatttcgtccctctccccacttaatcactgccacgtcactaaattgatgacgtggca 40210639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 25065074 - 25065119
Alignment:
Q  139 ctaagtcagcaaattaggggttgtgctgacaaaaataccattggct 184  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||    
T  25065074 ctaagtcagcaaattagggggtgtgttgacaaaaatacccttggct 25065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 13914394 - 13914339
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| |||  |||||||||||| ||||||||||  |||||||    
T  13914394 aaaatttcgtccctctccccactaaatcactgccacgtcactaatttgatgacgtg 13914339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 27999177 - 27999118
Alignment:
Q  79 aaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggcagt 138  Q
    |||||||||| |||| | ||| ||||||||||||| |||||||||| |||| ||||||||    
T  27999177 aaatttcgtctctcttcccacttaatcactgccacctcactaatttgctgatgtggcagt 27999118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 14879072 - 14879130
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||| ||  ||||||||||  ||||||||||    
T  14879072 aaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatgacgtggca 14879130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 17662177 - 17662131
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||| | ||| ||||||||||||| ||||||||||    
T  17662177 aaaatttcgtccctcttcccacttaatcactgccacgtcactaattt 17662131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 41098834 - 41098892
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||| ||||| |||| ||| |||||||| |||||||||||||||  ||||||||||    
T  41098834 aaaattttgtccccctccccacttaatcactaccacatcactaatttgatgacgtggca 41098892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 42248574 - 42248620
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  42248574 aaaatttcgtccctctccccacttaatcactgccacgtgactaattt 42248620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 43758923 - 43758981
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||  ||| ||||||||||||  ||||||||||  ||||||||||    
T  43758923 aaaatttcgtccctctctccacttaatcactgccatgtcactaatttgatgacgtggca 43758981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 44523463 - 44523405
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||| |||||| | |||| ||||||||||||| |||||||||  |||||||||||    
T  44523463 aaaatttcatccctcccttcacttaatcactgccacgtcactaattagctgacgtggca 44523405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 21444695 - 21444740
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||||||| ||||| ||| ||||||||||||| |||||||||    
T  21444695 aaaatttcgtccatctccccacttaatcactgccacgtcactaatt 21444740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 22103833 - 22103788
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||||||||||||  ||| ||||||||||||| |||||||||    
T  22103833 aaaatttcgtccctctctccacttaatcactgccacgtcactaatt 22103788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 10304024 - 10304060
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccaca 114  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  10304024 aaaatttcgtccctctccccacttaatcactgccaca 10304060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 25065037 - 25065077
Alignment:
Q  81 atttcgtccctctcctcacgtaatcactgccacatcactaa 121  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  25065037 atttcgtccctctcctcacttgatcactgccacgtcactaa 25065077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 38643691 - 38643791
Alignment:
Q  139 ctaagtcagcaaattaggggttgtgctgacaaaaataccattggcttgttcagaccaatgaacaatgacaaaagtgccgttgacttcatcttctcatctc 238  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||  | |||||||||| |||||||    
T  38643691 ctaattcagcaaattaggggttgtgttgacaaaaatacccttggcttgttcagaccaatgcacaatgaccaaagtgcccctaacttcatcttgtcatctc 38643790  T
Q  239 t 239  Q
    |    
T  38643791 t 38643791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 24388920 - 24388978
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||||  ||||||||||    
T  24388920 aaaatttcgtccctctccccacttaatcactgccacatcaccaatttgatgacgtggca 24388978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 28469335 - 28469277
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||||| |||| ||||||||||  ||||||||||    
T  28469335 aaaatttcgtccctctccccacttaatcactaccacgtcactaatttgatgacgtggca 28469277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 40379870 - 40379928
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||  ||||||||||    
T  40379870 aaaatttcgtccctctccccacttaatcaatgccacgtcactaatttgatgacgtggca 40379928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 40397659 - 40397576
Alignment:
Q  131 gtggcagtctaagtcagcaaattaggggttgtgctgacaaaaataccattggcttgttcagaccaatgaacaatgacaaaagtgc 215  Q
    |||||||| | || ||||||||||||||  |||||||| ||||||  ||||||||||| ||| ||||| |||||||| |||||||    
T  40397659 gtggcagtatgagccagcaaattaggggc-gtgctgacgaaaatatgattggcttgtttagaacaatgcacaatgaccaaagtgc 40397576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 42019924 - 42019868
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtgg 134  Q
    ||||||||||| |||||||||| ||||||||||||  ||||||||||  ||||||||    
T  42019924 aaaatttcgtctctctcctcacttaatcactgccatgtcactaatttgatgacgtgg 42019868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 3914239 - 3914294
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||| |  || ||||||||||||||||||||||||  |||||||    
T  3914239 aaaatttcgtccctcttccaacttaatcactgccacatcactaatttgatgacgtg 3914294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 42731520 - 42731575
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  |||||||    
T  42731520 aaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgacgtg 42731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 10935895 - 10935953
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||  ||| ||||||||||||  ||||||||||  ||||||||||    
T  10935895 aaaatttcgtccctctctccacttaatcactgccatgtcactaatttgatgacgtggca 10935953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 32053470 - 32053424
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  32053470 aaaatttcgtccctctccccacttaatcactgtcacgtcactaattt 32053424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 37656953 - 37657011
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||| | ||| ||||||||||  ||||||||||    
T  37656953 aaaatttcgtccctctccccacttaatcaccggcacgtcactaatttgatgacgtggca 37657011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 53129833 - 53129778
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  53129833 aaaatttcgtccctctccccacttaatcactgccacatcactaatttgatgacgtg 53129778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 14801837 - 14801895
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  14801837 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtggca 14801895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 48528573 - 48528672
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggcagtctaagtcagcaaattaggggttgtgctgacaaaaatacc 177  Q
    |||||||||| ||| ||| ||| ||||||||| ||||||||| |||  |||||||| |||||||| ||| ||||||  || |||  ||||||||||||||    
T  48528573 aaaatttcgttcctatccccacttaatcactgtcacatcactgattagctgacgtgacagtctaattcaacaaattttggcttgaactgacaaaaatacc 48528672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 16605703 - 16605761
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||||||| || ||| ||||||||||||| |||||||||  |||||||||||    
T  16605703 aaaatttcgtccctccccccacttaatcactgccacgtcactaattagctgacgtggca 16605761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 34765707 - 34765661
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  34765707 aaaatttcgtccctctccccacttaatcactgccacgtcactaattt 34765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 35028325 - 35028267
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  35028325 aaaatttcgtcactctccccacttaatcactgccacgtcactaatttgatgacgtggca 35028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 53701913 - 53701969
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtgg 134  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||||||||  ||||||||    
T  53701913 aaaatttcttccctctccccacttaatcactgccacgtcactaatttgatgacgtgg 53701969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 15508000 - 15507942
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||| ||||||||||| | ||||||||||  ||||||||||    
T  15508000 aaaatttcgtctctctccccacttaatcactgccgcgtcactaatttgatgacgtggca 15507942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 17356249 - 17356203
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  17356249 aaaatttcgtccctctccccacttaatcactgtcacgtcactaattt 17356203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 24349775 - 24349819
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaat 122  Q
    |||||||||||||||||| ||  ||||||||||||| ||||||||    
T  24349775 aaaatttcgtccctctccccagttaatcactgccacgtcactaat 24349819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 41583558 - 41583518
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcac 118  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  41583558 aaaatttcgtccctcttctcacttaatcactgccacgtcac 41583518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 44967365 - 44967329
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccaca 114  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  44967365 aaaatttcgtccctctccccacttaatcactgccaca 44967329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 52298127 - 52298187
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggcagt 138  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||| | | || ||||||||||    
T  52298127 aaaatttcgtctctctccccacttaatcactgccacgtcactattctgcttacgtggcagt 52298187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 23458306 - 23458251
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  23458306 aaaatttcgtccctctccccacttaatcactgccacatcactaatttgatgacgtg 23458251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 41988063 - 41988109
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  41988063 aaaatttcgtctctctcctcacttaatcactgccacatcactaattt 41988109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 33156321 - 33156263
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||||||| || ||| ||||||||||||| |||||||||  |||||||||||    
T  33156321 aaaatttcgtccctccccccacttaatcactgccacgtcactaattagctgacgtggca 33156263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 33689706 - 33689648
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||   ||||||||||    
T  33689706 aaaatttcgtccctctccccacttaatcactgccacgtcactaattcgatgacgtggca 33689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 40758245 - 40758303
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||||| |||| ||||||||||  ||||||||||    
T  40758245 aaaatttcgtccctctccccacttaatcactaccacgtcactaatttgatgacgtggca 40758303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 9294285 - 9294227
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||| ||  ||||||||||  ||||||||||    
T  9294285 aaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatgacgtggca 9294227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 26463925 - 26463879
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  26463925 aaaatttcgtccctctccccacttaatcactgtcacgtcactaattt 26463879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 51994213 - 51994173
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcac 118  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  51994213 aaaatttcgtccctctccccacttaatcactgccacgtcac 51994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 37890 - 37832
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  37890 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtggca 37832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 13186161 - 13186219
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||||    
T  13186161 aaaatttcgtctctctccccacttaatcactgccacgtcactaatttaatgacgtggca 13186219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 16388853 - 16388795
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  16388853 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtggca 16388795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 36928577 - 36928632
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  36928577 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtg 36928632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 31608840 - 31608794
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  31608840 aaaatttcgtccctctccccacttaatcactgccacgtcactaattt 31608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 35756683 - 35756741
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  ||||||||||    
T  35756683 aaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgacgtggca 35756741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 40318291 - 40318233
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||| ||||||||| ||||||||||||  ||||||||||  ||||||||||    
T  40318291 aaaatttcgtccttctcctcacttaatcactgccatgtcactaatttgatgacgtggca 40318233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 36186394 - 36186339
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    ||||||||||||||||||  || ||||||||||||||| ||||||||  |||||||    
T  36186394 aaaatttcgtccctctccctacttaatcactgccacattactaatttgatgacgtg 36186339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 39071777 - 39071823
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||| | ||||||||||    
T  39071777 aaaatttcgtccctctccccacttaatcactgccgcgtcactaattt 39071823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 11291226 - 11291193
Alignment:
Q  90 ctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||||| |||||||||||||||||||||||    
T  11291226 ctctcctcacttaatcactgccacatcactaatt 11291193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 38862719 - 38862755
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccaca 114  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  38862719 aaaatttcgtccctctccccacttaatcactgccaca 38862755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 38955804 - 38955840
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccaca 114  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  38955804 aaaatttcatccctctcctcacttaatcactgccaca 38955840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 13962965 - 13963023
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||  ||||||||||    
T  13962965 aaaatttcgtccctctcctcacttaatcactgtcacgtcactaatttgatgacgtggca 13963023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 35512249 - 35512295
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35512249 aaaatttcgtccctctccccacttaatcactgccacatcactaattt 35512295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 38442169 - 38442227
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||  ||||||||||    
T  38442169 aaaatttcgtccctctccccacttaatcactgccacataactaatttgatgacgtggca 38442227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 32242343 - 32242398
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  32242343 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtg 32242398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 5024345 - 5024299
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  5024345 aaaatttcgttcctctccccacttaatcactgccacatcactaattt 5024299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 5993990 - 5994045
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  |||||||    
T  5993990 aaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgacgtg 5994045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 11047538 - 11047596
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||| ||||||||||||  ||||||||||  ||||||||||    
T  11047538 aaaatttcgtctctctccccacttaatcactgccatgtcactaatttgatgacgtggca 11047596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 13362555 - 13362497
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||| ||| |||||| ||| |||||||||| |||||||||||||  ||||||||||    
T  13362555 aaaatttagtctctctccccacttaatcactgctacatcactaatttgatgacgtggca 13362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 14194750 - 14194692
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||||||| |  ||||||||||  ||||||||||    
T  14194750 aaaatttcgtccctctccccacttaatcactgctatgtcactaatttgatgacgtggca 14194692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 19892635 - 19892577
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||  ||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  19892635 aaaatttcgtcattctccccacttaatcactgccacgtcactaatttgatgacgtggca 19892577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 27937346 - 27937288
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||| |||||||||| |||  |||||||||||| ||||||||||  ||||||||||    
T  27937346 aaaattttgtccctctccccactaaatcactgccacgtcactaatttgatgacgtggca 27937288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 39453401 - 39453459
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||| ||  ||||||||||  ||||||||||    
T  39453401 aaaatttcgtccctctccccacttaatcactggcatgtcactaatttgatgacgtggca 39453459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 20840634 - 20840679
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    ||||||| |||||||||| ||| ||||||||||||| |||||||||    
T  20840634 aaaattttgtccctctccccacttaatcactgccacgtcactaatt 20840679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 40150118 - 40150081
Alignment:
Q  101 taatcactgccacatcactaatttactgacgtggcagt 138  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  40150118 taatcactgccacatcactaatttacttacgttgcagt 40150081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 18247187 - 18247243
Alignment:
Q  80 aatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||| ||| ||||||| ||||  ||||||||||  ||||||||||    
T  18247187 aatttcgtccctctccccacttaatcaccgccatgtcactaatttgatgacgtggca 18247243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 38475326 - 38475290
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccaca 114  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  38475326 aaaatttcgtccctctccccacttaatcactgccaca 38475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 13750 - 13795
Alignment:
Q  139 ctaagtcagcaaattaggggttgtgctgacaaaaataccattggct 184  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13750 ctaagtcagcaaattaggggttgtgttgacaaaaatacccttggct 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 14589 - 14535
Alignment:
Q  81 atttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggc 135  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||||    
T  14589 atttcgtccctctccccacttaatcactgccacatcactgattagctgacgtggc 14535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 37895674 - 37895619
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  37895674 aaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgacgtg 37895619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 15848189 - 15848235
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  15848189 aaaatttcgtccctctccccacttaatcactgccacgtcactaattt 15848235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 34447914 - 34447968
Alignment:
Q  79 aaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||||  |||||||    
T  34447914 aaatttcgtctctctccccacttaatcactgccacatcactaatttgatgacgtg 34447968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 36382262 - 36382320
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  36382262 aaaatttcatccctctccccacttaatcactgccacgtcactaatttgatgacgtggca 36382320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 39423616 - 39423674
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  ||||||||||    
T  39423616 aaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgacgtggca 39423674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 44714088 - 44714033
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtg 133  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  |||||||    
T  44714088 aaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgacgtg 44714033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 11689642 - 11689687
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||||||| ||||| ||| ||||||||||||| |||||||||    
T  11689642 aaaatttcgtccatctccccacttaatcactgccacgtcactaatt 11689687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 69066 - 69112
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  69066 aaaatttcgtccctctccccacttaatcactgccacgtcactaattt 69112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 3059358 - 3059416
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||||||| ||||||||||||  |||||||| |  ||||||||||    
T  3059358 aaaatttcgtccctctcctcacttaatcactgccatgtcactaatgtgatgacgtggca 3059416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 21628040 - 21627982
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||| |||||||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  21628040 aaaattttgtccctctccccacttaatcactgccacgtcactaatttgatgacgtggca 21627982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 30803962 - 30804020
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||  ||||||||||    
T  30803962 aaaatttcgtccctctccccacttaatcactgccatctcactaatttgatgacgtggca 30804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 33517635 - 33517693
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||| |||||||||| || ||||||||||  ||||||||||    
T  33517635 aaaatttcgtccctctccccacttaatcactgctacgtcactaatttgatgacgtggca 33517693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 33648792 - 33648747
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  33648792 aaaatttcttccctctcctcacttaattactgccacatcactaatt 33648747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 12080737 - 12080783
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaattt 124  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||    
T  12080737 aaaatttcgtccctctccccacttaatcactgccatgtcactaattt 12080783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 30725860 - 30725918
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    |||||||||||||||||| ||  ||||||||||||  ||||||||||  ||||||||||    
T  30725860 aaaatttcgtccctctccccatttaatcactgccatgtcactaatttgatgacgtggca 30725918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 33647064 - 33647122
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatttactgacgtggca 136  Q
    ||||||||||| |||||| ||  ||||||||||||| ||||||||||  ||||||||||    
T  33647064 aaaatttcgtctctctccccatttaatcactgccacgtcactaatttgatgacgtggca 33647122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 1215193 - 1215148
Alignment:
Q  78 aaaatttcgtccctctcctcacgtaatcactgccacatcactaatt 123  Q
    |||||||||||||| ||| ||| ||||||||||||| |||||||||    
T  1215193 aaaatttcgtccctatccccacttaatcactgccacgtcactaatt 1215148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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