View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_high_9 (Length: 231)

Name: NF2287_high_9

Description: NF2287

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2287_high_9

[»] chr3 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 158; E-Value: 3e-84

Query Start/End: Original strand, 49 - 214

Target Start/End: Original strand, 28762787 - 28762952

Alignment:

Q	49	cccattgacatccatatccaggaccaagcatcagaagagttcgaagtcacctttccttccaccgcctacaacaactcttccaaaaacataaactcctcca	148	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28762787	cccattgacatccatatccaggaccaagcatcagaagagttcgaagtcacctttccttccaccgcctgcaacaactcttccaaaaacataaactcctcca	28762886	T

Q	149	tccacaactccctcttccacctaaaaacgcactcccacctgtctcccacccaatacccaatatctg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28762887	tccacaactccctcttccacctaaaaacgcactcccacctgtctcccacccaataccccatatctg	28762952	T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 161 - 213

Target Start/End: Original strand, 27876837 - 27876888

Alignment:

Q	161	tcttccacctaaaaacgcactcccacctgtctcccacccaatacccaatatct	213	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	27876837	tcttccaccttaaaacccactccc-cctatctcccacccaataccccatatct	27876888	T

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