View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_low_1 (Length: 620)

Name: NF2287_low_1
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2287_low_1
NF2287_low_1
[»] chr5 (3 HSPs)
chr5 (18-574)||(17913944-17914496)
chr5 (42-491)||(17976687-17977139)
chr5 (43-113)||(35273353-35273423)
[»] chr2 (1 HSPs)
chr2 (88-180)||(8823289-8823381)


Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Complemental strand, 17914496 - 17913944
Alignment:
Q  18 tttctgagatggcttttcggcctggaggtcaagtggcgggaagattaatttttcgcattcgctaggcactgagaatgcaccgccgttattagcatcagac 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17914496 tttctgagaaggcttttcggcctggaggtcaagtggcgggaagattaattttgcgcattcgctaggcactgagaatgcaccgccgttattagcatcagac 17914397  T
Q  118 ggagttagagttttttcagaggaaacaacctcaaccccgtcatgttggtcttcacgaacctcaagagg---ttcgtggacacagttgttagtaccaggag 214  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||    
T  17914396 ggagttagagttttgccagaggaaacaaccttaaccccgtcatgttggtcttcacgaacctcaggaggaggttcgtggacacagttattagtaccaggag 17914297  T
Q  215 tgagaagtaatttgacgaacacttcatcggtaacagggtcagcgagtagattaaccgtggagacggtgcagggaatgaattgacgggaacgatcaagaag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17914296 tgagaagtaatttgacgaacacttcatcggtaacagggtcagcgagtagattaaccgtggagacggtgcagggaatgaattgacgggaacggtcaagaag 17914197  T
Q  315 ggagagtgtgctagggtttggggatggagagacgtgttctaagtgccctaatgggaagtagtaaacatgagaatgtagttttggaattttaacagcagcg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  17914196 ggagagtgtgctagggtttggggatggagagacgtgttctaagtgccctaatgggaagtagtaaacatgagaatttagttttggaattttaacggcagcg 17914097  T
Q  415 ccggcgcagcactgccagatttttggatcaacacagataggttgctgaggagacatggcggagggattaactaggagaagggagaatttgctatgaagaa 514  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||     
T  17914096 ccggcgcagcactgccagatttttggatcaacacggataggttgctgaggagacatggcggagggattaactaggagaagggagaatttgctat---gac 17914000  T
Q  515 gagagtaagagagaagcgcgaataaggaaggtatatatatgattagggttttcaaagttt 574  Q
    |||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||    
T  17913999 gagagtaagagagaagcgcgaacaaggaagg----tatatgattagggttttcaaagttt 17913944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 42 - 491
Target Start/End: Original strand, 17976687 - 17977139
Alignment:
Q  42 gaggtcaagtggcgggaagattaatttttcgcattcgctaggcactgagaatgcaccgccgttattagcatcagacggagttagagttttttcagaggaa 141  Q
    |||||||||||||||||||||||||||  |||||||    ||||| |||||||||||||| || ||||||||||| || || ||||| ||   | |||||    
T  17976687 gaggtcaagtggcgggaagattaatttcgcgcattccactggcacagagaatgcaccgccattgttagcatcagatggggtgagagtcttggaataggaa 17976786  T
Q  142 acaacctcaaccccgtcatgttggtcttcacgaacctcaagag------gttcgtggacacagttgttagtaccaggagtgagaagtaatttgacgaaca 235  Q
    |||||||      | |||| || ||||||||||||||||||||      ||||||| ||||  ||||||||  |||||||||| |||| ||||||||| |    
T  17976787 acaacctttttgtcatcatctttgtcttcacgaacctcaagagagtgaggttcgtgaacacctttgttagtgacaggagtgaggagtagtttgacgaaga 17976886  T
Q  236 cttcatcggtaacagggtcagcgagtagattaaccgtggagacggtgcagggaatgaattgacgggaacgatcaagaagggagagtgtgctagggtttgg 335  Q
    |||||||||||  | ||||||||||||||| ||||| |||||| |||||| |||||||| |||||||||| |||||| |||| |||||| ||||||||||    
T  17976887 cttcatcggtacaaaggtcagcgagtagatcaaccgcggagactgtgcagagaatgaatggacgggaacggtcaagatgggacagtgtgttagggtttgg 17976986  T
Q  336 ggatggagagacgtgttctaagtgccctaatgggaagtagtaaacatgagaatgtagttttggaattttaacagcagcgccggcgcagcactgccagatt 435  Q
    ||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |  ||| || |||||||||||||||    
T  17976987 ggatggacatatgtgttctaagtgccctaatgggaagtagtaaacatgagaatatagttttggaattttaacggaactgcctgcacagcactgccagatt 17977086  T
Q  436 tttggatcaacacagataggttgctgaggagacatggcggagggattaactaggag 491  Q
    ||  ||||||||| |    ||||||||| ||||||||||||| ||||||| |||||    
T  17977087 ttctgatcaacacgg---cgttgctgagaagacatggcggagagattaacaaggag 17977139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 35273423 - 35273353
Alignment:
Q  43 aggtcaagtggcgggaagattaatttttcgcattcgctaggcactgagaatgcaccgccgttattagcatc 113  Q
    ||||||||||||||||| || |||||  |||||||   ||| || |||||||||||||| |||||||||||    
T  35273423 aggtcaagtggcgggaatatcaatttcgcgcattcagaaggtacggagaatgcaccgccattattagcatc 35273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 8823381 - 8823289
Alignment:
Q  88 gagaatgcaccgccgttattagcatcagacggagttagagttttttcagaggaaacaacctcaaccccgtcatgttggtcttcacgaacctca 180  Q
    ||||||||||| |||||||||||||||||  | |||||||| ||| |||||||||||| |||| | || | | ||| |||||| |||||||||    
T  8823381 gagaatgcaccaccgttattagcatcagatagggttagagtctttccagaggaaacaaactcatcacctttaggttcgtcttcccgaacctca 8823289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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