View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2287_low_2 (Length: 462)
Name: NF2287_low_2
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2287_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 11390257 - 11390700
Alignment:
| Q |
1 |
ggtgggaatttccggttgggggaaatctgatcgtggaatgaggtcggatagagtttcgagtggatggatgaagaatgatgggatggttttgattccggag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390257 |
ggtgggaatttccggttgggggaaatctgatcgtggagtgaggtcggatagagtttcgggtggatggatgaagaatgatgggatggttttgattccggag |
11390356 |
T |
|
| Q |
101 |
tctgttaggccttttacacctaatttggtttcatcgaattctttcaccgctttaacacggtcataaggtggtggagaaggagtgttgattggtgatgatg |
200 |
Q |
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| T |
11390357 |
tctgttaggccttttacacctaatttggtttcatcgaattctttcaccgctttaacacggtcataaggtggtggagaaggagtgttgattggtgatgatg |
11390456 |
T |
|
| Q |
201 |
acattgttagtaattgaatggaaataaaacgaggaatgaatgaatggaaataagtagattgttgattttgatttttcaaaccaaaccattgcatgttttc |
300 |
Q |
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| T |
11390457 |
acattgttagtaattgaatggaaataaaacgaggaatgaatgaatggaaataagtagattgttgattttgatttttcaaaccaaaccattgcatgttttc |
11390556 |
T |
|
| Q |
301 |
tgaatagtcaaatgagacttagctaacatgataagattcaactattttggtttttgactaaacatgcaatgcaagagtttaatggtttgtattcaaacaa |
400 |
Q |
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| T |
11390557 |
tgaatagtcaaatgagacttagctaacatgataagattcaactattttgctttttgactaaacatgcaatgcaagagtttaatggtttgtattcaaacaa |
11390656 |
T |
|
| Q |
401 |
accactgcagtcaaatgaaagacattatgattcaatgcagtcat |
444 |
Q |
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| T |
11390657 |
acaactgcagtcaaatgaaagacattatgattcaatgcagtcat |
11390700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 11433921 - 11433750
Alignment:
| Q |
2 |
gtgggaatttccggttgggggaaatctgatcgtggaatgaggtcggatagagtttcgagtggatggatgaagaatgatgggatggttttgattccggagt |
101 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
11433921 |
gtggggattttcggttgggggaaatctgatcgtggagtgaggtcagatagggtttcaggtggatggatgaagaaagatggaatggttttgattccggagt |
11433822 |
T |
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| Q |
102 |
ctgttaggccttttacacctaatttggtttcatcgaattctttcaccgctttaacacggtcataaggtggtg |
173 |
Q |
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| T |
11433821 |
cgattatgccttttacgccggattttgtttcgtcgaattctttcaaggctttcacacggtcgtagggtggtg |
11433750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 11423296 - 11423145
Alignment:
| Q |
2 |
gtgggaatttccggttgggggaaatctgatcgtggaatgaggtcggatagagtttcgagtggatggatgaagaatgatgggatggttttgattccggagt |
101 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
11423296 |
gtggggatttccggttgggggaaatctgatcgtggagtgaggtcagataggatttcaggtggatggatgaagaaagatggaatggttttgattccggagt |
11423197 |
T |
|
| Q |
102 |
ctgttaggccttttacacctaatttggtttcatcgaattctttcaccgcttt |
153 |
Q |
| |
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| ||| ||||||||| || |||| ||||| |||||||||||||| ||||| |
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| T |
11423196 |
cgattaagccttttacgccggattttgtttcgtcgaattctttcacggcttt |
11423145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 11428043 - 11427898
Alignment:
| Q |
2 |
gtgggaatttccggttgggggaaatctgatcgtggaatgaggtcggatagagtttcgagtggatggatgaagaatgatgggatggttttgattccggagt |
101 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||| || || ||||| ||||| ||||||||||||||| ||| |
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| T |
11428043 |
gtgggaatttctggttgggggaaatctgatcgtggagtgagatcggatagagtttcgggtgggtgaataaagaaagatggaatggttttgattccgaagt |
11427944 |
T |
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| Q |
102 |
ctgttaggccttttacacctaatttggtttcatcgaattctttcac |
147 |
Q |
| |
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| ||| ||||||||| | |||| |||||||||||||||||||| |
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| T |
11427943 |
cgattaagccttttacgtcggattttgtttcatcgaattctttcac |
11427898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 11433714 - 11433682
Alignment:
| Q |
188 |
attggtgatgatgacattgttagtaattgaatg |
220 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
11433714 |
attggtgatgatgacattgttaggaattgaatg |
11433682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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