View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_low_4 (Length: 347)

Name: NF2287_low_4
Description: NF2287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2287_low_4
NF2287_low_4
[»] chr1 (8 HSPs)
chr1 (232-329)||(27995215-27995312)
chr1 (232-299)||(27994619-27994686)
chr1 (245-305)||(28005017-28005077)
chr1 (245-305)||(28005325-28005385)
chr1 (238-301)||(28004356-28004419)
chr1 (255-305)||(28004689-28004739)
chr1 (253-317)||(27994929-27994994)
chr1 (288-317)||(27995564-27995593)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 27995312 - 27995215
Alignment:
Q  232 aggggaagacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtactgcgctaacgggctaaatgcaaac 329  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  27995312 aggggaagacaggctatatattgttgtatatttttacgataagtatttactttcttgatatttgaaatatgtactgcgctaacgggcaaaatgcaaac 27995215  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 27994686 - 27994619
Alignment:
Q  232 aggggaagacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaat 299  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||   ||||||||||||||    
T  27994686 aggggcagacagactatatattgttgtatatttttacgataagtattcactactttggtatttgaaat 27994619  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28005077 - 28005017
Alignment:
Q  245 ctatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    |||| |||| |||||||||||||||||||||||| ||| |||||| |||| ||||||||||    
T  28005077 ctatgtattgttgtatatttttacgataagtattcactgtcttggaatttaaaatatgtac 28005017  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28005385 - 28005325
Alignment:
Q  245 ctatatattattgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    ||||||||| ||||||||||||| |||||||||| ||  |||||| |||||||||||||||    
T  28005385 ctatatattgttgtatatttttatgataagtattcaccgtcttgggatttgaaatatgtac 28005325  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 28004419 - 28004356
Alignment:
Q  238 agacagactatatattattgtatatttttacgataagtatttactttcttggtatttgaaatat 301  Q
    |||||| || |||||  |||||||||||||| ||||||||| |||  |||||||||||||||||    
T  28004419 agacaggctgtatatagttgtatatttttacaataagtattcactaccttggtatttgaaatat 28004356  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 28004739 - 28004689
Alignment:
Q  255 ttgtatatttttacgataagtatttactttcttggtatttgaaatatgtac 305  Q
    ||||||| |||||||||||||||| ||| |||| | |||||||||||||||    
T  28004739 ttgtatacttttacgataagtattcactatcttaggatttgaaatatgtac 28004689  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 27994994 - 27994929
Alignment:
Q  253 tattgtatat-ttttacgataagtatttactttcttggtatttgaaatatgtactgcgctaacggg 317  Q
    |||||||||| |||||| |||| |||| | | ||| |||||||||||||||||| |||||||||||    
T  27994994 tattgtatatgttttacaataattattcattgtctcggtatttgaaatatgtacagcgctaacggg 27994929  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 27995593 - 27995564
Alignment:
Q  288 ggtatttgaaatatgtactgcgctaacggg 317  Q
    ||||||||||||||||||||||||||||||    
T  27995593 ggtatttgaaatatgtactgcgctaacggg 27995564  T

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